Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00008 ATGGAGAGAACAGCAGATTCAATGTCTTATGTTACAAAATGTTTCATGTGGTTATCTTTATTAATCAGCACGATGACGATCTTGTCAAAGCCTGCAGTGTCTTCAAATATCATCAGGTCTTTGCCAGGGTTTTCTGGTCCCCTTCCTTTCAAATTAGAGACTGGATACATAGGTGTGGGTGAAGATGAAGTTGTGCAGCTGTTTTATTATTATGTTGAATCAGAAGGAAATCCAACAGAGGATCCTTTGGTACTCTGGATGACCGGTGGCCCAGGATGCTCTGGCTTATGCGGGCTTTGGTTTGAAATAGGCCCTCTGAAGTTCAATATGGTGAAATATAATGGAAGTTTGCCAACATTTTCTCTCAATCAACACTCATGGACAAAGGTCTCAAGTATAATCTTTATTGATGCACCTGTTGGCACTGGATTCTCATATTCAAGAACCTTGGAAGGGGCTAATATTACAGATAAAATCAATGCCCAACACACTCACGATTTCATGAGAAAGTGGTTGACCGGTCACCCGAAATTTATTGCTAATCCAGTCTACATTGCTGGTGATTCATATGCTGGCATGCCTGTACCAATTGTTGTTAAATATATTTCAGATGGAAACGAAGCTGGAGATAAGCCAAAAATAAATATAAAAGGTTATGTGCTTGGGAATGCATTTGCAGATCCAAAATTTGATGAGAATTCTAGGATTGTTTTTGCTAATCGCATGGCTCTTATTTCTGACAAACTCTACAGGTCAGCAAAAATGACATGCAAAGGGGAGTATGTGATAGTGGAGAAAGATAATCTACCATGTCAAAAGGATCTCCAAGCTATCTCAGAGCGAACAGGTGATATAAATATTGAACATGTCTTAGAGCCTAAATGTCCGTCTGACAGGAAAATTACAGAAAATAGGAAGGATGATCAGAGGATACTTCAAGAAAAATATAGGGATTTGTTGCTTTCTCCAGAGCAAGTCTTACAGTTTGGGTGTAGGAATTATGAGAATTTATTGCTGCATGTATGGGCCAACGATGTTCATGTTCAAAAGGCGCTGCATGTTCGTATGGGAACTGTGAACGCTTGGATAAGATGTAACAACAGCATAATTTACACAAAAGATGTCCAAAGTTCTCTAGCCTATCATCGTTATCTCAGAACCAAACATTTCCGGGCTCTTATATACAGCGGTGACCATGACATGGCGATGCCATACTTGGGAACTCTCTGGTGGCTCAATTCTCTGAACTCTACCATTTTGGATGACTGGAGACCGTGGATCGTCGGTGATCTAGTTGCAGGGTATATACGAGAGTACTCCAACTATATCACTTTTGCCACTGTGAAGGGTGCTGGTCACACTGCCCCAGAGTACATGCCACAGGAATGCTTTGAAATGTTTAAGAGGTGGATCTCTCATGAGCCTCTGTGA 1431 0.4088 MERTADSMSYVTKCFMWLSLLISTMTILSKPAVSSNIIRSLPGFSGPLPFKLETGYIGVGEDEVVQLFYYYVESEGNPTEDPLVLWMTGGPGCSGLCGLWFEIGPLKFNMVKYNGSLPTFSLNQHSWTKVSSIIFIDAPVGTGFSYSRTLEGANITDKINAQHTHDFMRKWLTGHPKFIANPVYIAGDSYAGMPVPIVVKYISDGNEAGDKPKINIKGYVLGNAFADPKFDENSRIVFANRMALISDKLYRSAKMTCKGEYVIVEKDNLPCQKDLQAISERTGDINIEHVLEPKCPSDRKITENRKDDQRILQEKYRDLLLSPEQVLQFGCRNYENLLLHVWANDVHVQKALHVRMGTVNAWIRCNNSIIYTKDVQSSLAYHRYLRTKHFRALIYSGDHDMAMPYLGTLWWLNSLNSTILDDWRPWIVGDLVAGYIREYSNYITFATVKGAGHTAPEYMPQECFEMFKRWISHEPL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00008 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Gabi588g00008 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Gabi588g00008 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 443 456 IPR001563 GO:0004185|GO:0006508
Gabi588g00008 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Gabi588g00008 476 SUPERFAMILY alpha/beta-Hydrolases 38 475 IPR029058 -
Gabi588g00008 476 FunFam Carboxypeptidase 330 475 - -
Gabi588g00008 476 FunFam Serine carboxypeptidase-like 19 31 301 - -
Gabi588g00008 476 Pfam Serine carboxypeptidase 42 472 IPR001563 GO:0004185|GO:0006508
Gabi588g00008 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 460 IPR001563 GO:0004185|GO:0006508
Gabi588g00008 476 ProSitePatterns Serine carboxypeptidases, histidine active site. 443 460 IPR033124 GO:0004185
Gabi588g00008 476 Gene3D - 331 476 - -
Gabi588g00008 476 Gene3D alpha/beta hydrolase 32 306 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00008 Gabi-Chr588 194887 198410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00008 32 61 Calmodulin-binding Proteins AT2G22960 63.333 2.10e-06 46.6