Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00006 ATGTCTTATGTTACAAAATGTTTCATGTGGTTATTTTTATTGACCACCACGATGACGATCTTGTCAAAGCCTGCAGTGTCTTCAAATATCATCAGGTCTTTGCCAGGGTTTTCTGGTTCCCTTCCTTTCAAATTAGAGACTGGATACATAGGTGTGGGTGAAGATGAAGTTGTGCAGCTGTTTTATTATTATGTTGAATCAGAAGGAAATCCAGCAGAGGATCCTTTGGTACTCTGGATGACCGGTGGCCCAGGATGCTCTGGCTTATGCGGGCTTTGGTTGGAAATAGGCCCTCTGAAGTTCAATATGGTGAAGTATAATGGAAGTTTGCCAACATTTTCTCTCAATCAACACTCATGGACAAAGGTTTCAAGTATAATCTTTATTGATGCACCTGTTGGCACTGGATTCTCATATTCAAGAACCTTGGAAGGGGCTAATACTACAGATAAAATCAATGCCCAACACTGTCACGATTTCATGAGAAAGTGGTTGACCGGTCACCCGAAATTTATTGCTAATCCTGTCTACATTGCTGGTGATTCGTCTTCTGGCATGCCTGTACCAATTGTTGTTAAATATATTTCAGATGGAAACGAAGCTGGAGATAAGCCAAAAATAAATATAAAAGGTTATGTGCTTGGGAACCCATTTGCAGATCCAAAATTTGATCAGAATTCTAAGATTGCTTTTGCTAATCGCATGGCTCTTATTTCTGACAAACTCTACAGGTCAGCAAAAATGACATGCAAAGGGGAGTATGTGAGAGTGAAGAAAGATAATCTACCATGTCAAAAGAATCTCGAAGCTATCTCAGAGCGAACAGGTGATATAAATATTGAACATGTCTTAGAGCCTAAATGTCCGTCTGACAGGAAATTTCCAGAAAATAGGATGGGTGATCGGAGGATTCTTCAAGAAAAATATAGAGATTGGTTGCTTTCTCCTGTGCAAAGTTTACAATTTGGGTGTAGGAATTATGAAAATTTATTGCTGCATGTATGGGCCAACGATGTTCATGTTCAAAAGGCTCTGCATGTTCGTATGGGAACTGTGAACGCTTGGATAAGATGTAACAACAGCATAATTTACACAAAAGATGTCCAAAGTTCTCTAGCCTATCATCGTTATCTCAGAACCAAACATTTCCGGGCTCTTATATACAGCGGTGACCATGACATGGCGGTGCCATACTTGGGAACTCTCTGGTGGCTCAATTCTCTGAACTCTACCATTATTGATGATTGGAGACCTTGGGTCGTCGGCGATCAAATTGCAGGGTATATACGAGAGTACTCCAACTATGTCACTTTTGCCACTGTGAAGGGTGCTGGTCACACTGCTTCAGAGTTCATGCCGCAGGAATGCTTTGAAATGTTCAAGAGGTGGATCTCTCATGAGCCTTTGTGA 1410 0.4099 MSYVTKCFMWLFLLTTTMTILSKPAVSSNIIRSLPGFSGSLPFKLETGYIGVGEDEVVQLFYYYVESEGNPAEDPLVLWMTGGPGCSGLCGLWLEIGPLKFNMVKYNGSLPTFSLNQHSWTKVSSIIFIDAPVGTGFSYSRTLEGANTTDKINAQHCHDFMRKWLTGHPKFIANPVYIAGDSSSGMPVPIVVKYISDGNEAGDKPKINIKGYVLGNPFADPKFDQNSKIAFANRMALISDKLYRSAKMTCKGEYVRVKKDNLPCQKNLEAISERTGDINIEHVLEPKCPSDRKFPENRMGDRRILQEKYRDWLLSPVQSLQFGCRNYENLLLHVWANDVHVQKALHVRMGTVNAWIRCNNSIIYTKDVQSSLAYHRYLRTKHFRALIYSGDHDMAVPYLGTLWWLNSLNSTIIDDWRPWVVGDQIAGYIREYSNYVTFATVKGAGHTASEFMPQECFEMFKRWISHEPL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00006 469 FunFam Carboxypeptidase 323 468 - -
Gabi588g00006 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 450 IPR001563 GO:0004185|GO:0006508
Gabi588g00006 469 Pfam Serine carboxypeptidase 35 465 IPR001563 GO:0004185|GO:0006508
Gabi588g00006 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Gabi588g00006 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Gabi588g00006 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Gabi588g00006 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Gabi588g00006 469 FunFam Serine carboxypeptidase-like 19 24 293 - -
Gabi588g00006 469 Gene3D - 324 469 - -
Gabi588g00006 469 SUPERFAMILY alpha/beta-Hydrolases 31 468 IPR029058 -
Gabi588g00006 469 Gene3D alpha/beta hydrolase 25 298 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00006 Gabi-Chr588 111162 114521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00006 335 469 Calmodulin-binding Proteins AT2G22960 55.556 3.18e-49 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00006 K16296 - tcc:18611311 583.178