Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00004 ATGACCGGTGGCCCAGGATGCTCTGGCTTATGCGGGCTTTGGTTTGAAATAGGCCCTCTGAAGTTCAATATGGTGAAGTATAATGGAAGTTTGCCAACATTTTCTCTCAATCAACACTCATGGACAAAGGTTTCAAGTATGATCTTTATTGATGCACCTGTTGGCACTGGATTCTCATATTCAAGAACCTTGGAAGGAGCTAATATTACAGATAAAATAAATGCCCAACACTGTCACGATTTCATGAGAAAGTGGTTGACCGGTCACCCCAAATTTATTGCTAATCCAGTCTACATTGGTGGTGACTCATATTCTGGCATTCCTGTGCCAATTGTTGTTAAATATATTTCAGATGGAAACGAAGATGGAGAAAAGCCAGAAATAAATATAAAAGGTTATGTGCTTGGGAACCCAATTACGGATCCAAAATTTGATCGGAATTCTAAGATTCCATTCGCTAATCGCATGGCTCTTATTTCTGACGAACTCTACAAGTCAGCAAAAATGACATGCAAAGGGGAGTATGTGATAGTGAAGAAAGATAATCTACCATGTCAAAAGGATCTCCAAGCTATCTCAGAGCGAACAGTTGACATAAATATGGGACACGTCTTAGAGCCTAAATGTCCGTCTGACAGGAAATTTCCAGAAAATAGGATGGATGATCGGAGGATTCTTCAAGAAAAATATAGGGATTTGTTGCTTTCTCCCGTGCAAAGTTTAGAGTTTGGGTGTAGGAATTATAAGAATTTATTGCTTCATGTATGGGCCAACGATGTTCATGTTCAAAAGGCGCTGCATGTCCGTATGGGAACTGTGAACGCTTGGATAAGATGTAACGACAACATGTTTTACACAAAAGATGTCGAAAGTTCAATTGCCTATCATCGTTATCTAAGAACCAAACATTGCCGAGCACTTATATACAGCGGTGACCATGACATGGTTGCGCCATACTTGGGAACTCTCCGGTGGCTCAATTCTCTGAACTCTACCATTGTGGATGATTGGAGACCTTGGGTCGTTAGCGATCAAATTGCAGGGTATATACGAGAGTACTCCAACTATGTCACTTTTGCCACTGTGAAGGGTGCTGGTCACGTTGCCACTGAGTTCATGCCACAGGAATGCTTTGAAATGTTCAAGAGGTGGATCTCTCATGAGCCTTTGTGA 1173 0.4143 MTGGPGCSGLCGLWFEIGPLKFNMVKYNGSLPTFSLNQHSWTKVSSMIFIDAPVGTGFSYSRTLEGANITDKINAQHCHDFMRKWLTGHPKFIANPVYIGGDSYSGIPVPIVVKYISDGNEDGEKPEINIKGYVLGNPITDPKFDRNSKIPFANRMALISDELYKSAKMTCKGEYVIVKKDNLPCQKDLQAISERTVDINMGHVLEPKCPSDRKFPENRMDDRRILQEKYRDLLLSPVQSLEFGCRNYKNLLLHVWANDVHVQKALHVRMGTVNAWIRCNDNMFYTKDVESSIAYHRYLRTKHCRALIYSGDHDMVAPYLGTLRWLNSLNSTIVDDWRPWVVSDQIAGYIREYSNYVTFATVKGAGHVATEFMPQECFEMFKRWISHEPL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00004 390 Gene3D alpha/beta hydrolase 1 389 IPR029058 -
Gabi588g00004 390 SUPERFAMILY alpha/beta-Hydrolases 2 389 IPR029058 -
Gabi588g00004 390 FunFam Carboxypeptidase 244 389 - -
Gabi588g00004 390 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 370 IPR001563 GO:0004185|GO:0006508
Gabi588g00004 390 Pfam Serine carboxypeptidase 2 386 IPR001563 GO:0004185|GO:0006508
Gabi588g00004 390 PRINTS Carboxypeptidase C serine protease (S10) family signature 37 49 IPR001563 GO:0004185|GO:0006508
Gabi588g00004 390 PRINTS Carboxypeptidase C serine protease (S10) family signature 357 370 IPR001563 GO:0004185|GO:0006508
Gabi588g00004 390 PRINTS Carboxypeptidase C serine protease (S10) family signature 85 110 IPR001563 GO:0004185|GO:0006508
Gabi588g00004 390 PRINTS Carboxypeptidase C serine protease (S10) family signature 50 60 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00004 Gabi-Chr588 62790 69990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00004 256 390 Calmodulin-binding Proteins AT2G22960 54.074 6.34e-49 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00004 K16296 - tcc:18611311 514.227