Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi585g00001 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATGAGGATTAATCGTGATCAGGATGAGAGAAAAAATAATAACAGCAGGGATTTGAACTTGCAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1539 0.4003 MKRVRDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDMRINRDQDERKNNNSRDLNLQRFHEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi585g00001 512 MobiDBLite consensus disorder prediction 83 184 - -
Gabi585g00001 512 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi585g00001 512 Pfam Paired amphipathic helix repeat 231 276 IPR003822 GO:0006355
Gabi585g00001 512 MobiDBLite consensus disorder prediction 297 322 - -
Gabi585g00001 512 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi585g00001 512 MobiDBLite consensus disorder prediction 119 148 - -
Gabi585g00001 512 PANTHER SIN3B-RELATED 9 512 IPR039774 GO:0003714
Gabi585g00001 512 SUPERFAMILY PAH2 domain 210 277 IPR036600 GO:0006355
Gabi585g00001 512 MobiDBLite consensus disorder prediction 157 184 - -
Gabi585g00001 512 MobiDBLite consensus disorder prediction 89 109 - -
Gabi585g00001 512 Pfam Sin3 family co-repressor 341 433 IPR013194 -
Gabi585g00001 512 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi585g00001 512 Coils Coil 412 442 - -
Gabi585g00001 512 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi585g00001 512 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi585g00001 512 SMART hdac_interact2seq4b 339 439 IPR013194 -
Gabi585g00001 512 ProSiteProfiles PAH domain profile. 209 279 IPR003822 GO:0006355
Gabi585g00001 512 FunFam Paired amphipathic helix protein SIN3 206 281 - -
Gabi585g00001 512 Gene3D Paired amphipathic helix 207 280 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi585g00001 Gabi-Chr585 12730 16245 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi585g00001 Sin3_corepress 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi585g00001 K11644 - gmx:100807181 800.045