Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi583g00003 ATGGGAGCTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATTATAACACAGGTTTAAATTCAAAGAATGTGAGTAATGATGGAAATGATCTCAGCAGCACAAACAGTAAAGGTTCGGCTGTCTCAGTGTCTCAGACTACTCGGAGTGAGGGTGATATCTTGCAGTCATCCAATTTAAAGAGCTTTACTTTAGCAGAACTTAAGACAGCCACTAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCATTGGCGGCTGCCAGACCTGGTACTGGCATTGTTATTGCTGTGAAGAGACTTAATCAAGAGAGCTATCAGGGTCACAGGGAGTGGTTGGCTGAAGTTAACTTTCTTGGACAGTTTTCTCATCCTCATCTAGTGAGGTTGATTGGTTATTGCCTTGAAGATGAACACCGCCTTCTCGTTTATGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATATTTCCAACCTCTTTCTTGGAGCCTCCGTTTAAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCAAAATATAATGCAAAGCTCTCTGATTTTGGGCTGGCAAAGGATGGACCAACTGGTGACAAAAGCCATGTCTCCACCCGGGTTATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTACCAAGAGTGATGTGTATAGTTTTGGGGTTGTCCTGCTGGAAATGTTATCTGGCAAGCGGGCAGTTGACAAGAATAGACCATCTGGACAACAAAATTTGGTGGAATGGGCTAGACCCTACCTTGCTAACAAACGTAAGATTTTCCGGGTGTTGGACAGCCGTCTCGAAGGGCAGTATTCAACAGAAGAAGCCTACAAGGCAGCCACCCTTGCTTTGAGATGCCTATCAACAGAATCCAAGTTCAGGCCCAACATGGATGAAGTTGTTACAACTTTGGAGCAGTTGCATGTTCCTAATCAAAATCCTTCTGCTAATGGCTCTCGTGTTCGCAGAAGAAGTGCTGATGATGGTACTACCTGTGGAAGGGCCCCTACAGCTTATCCCCGGCCATCTGCATCCCCTCTCTATACATGA 1209 0.4458 MGACLSAQIKAESPYYNTGLNSKNVSNDGNDLSSTNSKGSAVSVSQTTRSEGDILQSSNLKSFTLAELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLAAARPGTGIVIAVKRLNQESYQGHREWLAEVNFLGQFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNVLLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGKRAVDKNRPSGQQNLVEWARPYLANKRKIFRVLDSRLEGQYSTEEAYKAATLALRCLSTESKFRPNMDEVVTTLEQLHVPNQNPSANGSRVRRRSADDGTTCGRAPTAYPRPSASPLYT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi583g00003 402 MobiDBLite consensus disorder prediction 362 402 - -
Gabi583g00003 402 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Gabi583g00003 402 PANTHER OS01G0588500 PROTEIN-RELATED 41 361 - -
Gabi583g00003 402 FunFam Probable serine/threonine-protein kinase PBL8 161 376 - -
Gabi583g00003 402 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi583g00003 402 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Gabi583g00003 402 CDD STKc_IRAK 81 360 - -
Gabi583g00003 402 MobiDBLite consensus disorder prediction 18 50 - -
Gabi583g00003 402 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Gabi583g00003 402 Pfam Protein tyrosine and serine/threonine kinase 79 357 IPR001245 GO:0004672|GO:0006468
Gabi583g00003 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Gabi583g00003 402 Gene3D Transferase(Phosphotransferase) domain 1 161 380 - -
Gabi583g00003 402 SUPERFAMILY Protein kinase-like (PK-like) 44 357 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi583g00003 Gabi-Chr583 74867 77927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi583g00003 3 357 Glycoside Hydrolase AT3G07070 45.531 5.59e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi583g00003 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi583g00003 - - gmx:100798404 692.96