Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi583g00002 ATGGGAGCTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATTATAACACAGGTTTAAATTCAAAGAATGTGAGTAATGATGGAAATGATCTCAGCAGCACAAACAGTAAAGGTTCGGCTGTCTCAGTGTCTCAGACTACTCGGAGTGAGGGTGATATCTTGCAGTCATCCAATTTAAAGAGCTTTACTTTAGCAGAACTTAAGACAGCCACTAGAAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCATTGGCGGCTGCCAGACCTGGTACTGGCATTGTTATTGCTGTGAAGAGACTTAATCAAGAGAGCTATCAGGGTCACAGGGAGTGGTTGTTTTCTCATCCTCATCTAGTGAGGTTGATTGGTTATTGCCTTGAAGATGAACACCGCCTTCTCGTTTATGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATATTTCCAACCTCTTTCTTGGAGCCTCCGTTTAAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCAAAATATAATGCAAAGCTCTCTGATTTTGGGCTGGCAAAGGATGGACCAACTGGTGACAAAAGCCATGTCTCCACCCGGGTTATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTACCAAGAGTGATGTGTATAGTTTTGGGGTTGTCCTGCTGGAAATGTTATCTGGCAAGCGGGCAGTTGACAAGAATAGACCATCTGGACAACAAAATTTGGTGGAATGGGCTAGACCCTACCTTGCTAACAAACGTAAGATTTTCCGGGTGTTGGACAGCCGTCTCGAAGGGCAGTATTCAACAGAAGAAGCCTACAAGGCAGCCACCCTTGCTTTGAGATGCCTATCAACAGAATCCAAGTTCAGGCCCAACATGGATGAAGTTGTTACAACTTTGGAGCAGTTGCATGTTCCTAATCAAAATCCTTCTGCTAATGGCTCTCGTGTTCGCAGAAGAAGTGCTGATGATGGTACTACCTGTGGAAGGGCCCCTACAGCTTATCCCCGGCCATCTGCATCCCCTCTCTATACATGA 1185 0.4464 MGACLSAQIKAESPYYNTGLNSKNVSNDGNDLSSTNSKGSAVSVSQTTRSEGDILQSSNLKSFTLAELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLAAARPGTGIVIAVKRLNQESYQGHREWLFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNVLLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGKRAVDKNRPSGQQNLVEWARPYLANKRKIFRVLDSRLEGQYSTEEAYKAATLALRCLSTESKFRPNMDEVVTTLEQLHVPNQNPSANGSRVRRRSADDGTTCGRAPTAYPRPSASPLYT 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi583g00002 394 PANTHER OS01G0588500 PROTEIN-RELATED 41 353 - -
Gabi583g00002 394 FunFam Serine/threonine-protein kinase BIK1 42 152 - -
Gabi583g00002 394 Gene3D Transferase(Phosphotransferase) domain 1 153 372 - -
Gabi583g00002 394 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi583g00002 394 CDD STKc_IRAK 81 352 - -
Gabi583g00002 394 Pfam Protein tyrosine and serine/threonine kinase 79 349 IPR001245 GO:0004672|GO:0006468
Gabi583g00002 394 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Gabi583g00002 394 MobiDBLite consensus disorder prediction 18 50 - -
Gabi583g00002 394 MobiDBLite consensus disorder prediction 354 394 - -
Gabi583g00002 394 SUPERFAMILY Protein kinase-like (PK-like) 44 349 IPR011009 -
Gabi583g00002 394 FunFam Probable serine/threonine-protein kinase PBL8 153 368 - -
Gabi583g00002 394 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Gabi583g00002 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi583g00002 Gabi-Chr583 74864 77928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi583g00002 3 349 Glycoside Hydrolase AT3G07070 44.972 2.82e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi583g00002 PK_Tyr_Ser-Thr 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi583g00002 - - gmx:100798404 671.389