Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi57g00012 ATGTCTACGATGAAGTACACTCACCACCTTAACCGCACCAAACTCGTCATACCAGCGGAAGAACACCCACTAAAGCAACCTTTTCCGAGAGTGGTGAGGATAAGCGTCACAGACACCGATGCTACCGACTCTTCTTCCAGCGACGAGGAACAAGGCTTCCGGTCTTCCACGCGCCACCGACATAAAAAGTTCGTCAACGAGATTGTTATTGATTCGTGCACCAGCGAGATTGACGGCGTCGTTTCGAGGAAGAGAAGCAGGGCCAAGTCAAGCGCCCCCGTCAAAGACAGAGTCCCGGCGAGTCGGCGTGTCTCCTCCGGCAAGAAATTCCGGGGAGTGAGGCAGAGGCCGTGGGGAAAATGGGCCGCTGAAATAAGAGACCCATTGCGACGCGTACGGTTGTGGTTGGGTACTTACGACACTGCTGAGGAAGCTGCAATGGTGTACGACAACGCGGCCATCAAGCTGCGTGGACCCCACGCGCTCACCAATATCATAACGCCACCAACCGCGAGGCAGTGCTCGCCGGAGAATCAAAAGCCTCCGCCGGCGGTGGTGACCGGCGGTTACAATTCAGGGGAAGAATCTCAAAACAAGAATTTGTTTTCTCCAACTTCTGTGCTGCAGTGTTGTTCGTTATCCGAGGAAGGTGAATCTGTCAAATGTGAGTCGCTGTTTCCAATTCCAAGCGATATACAATTTGACTTGCAAGGTTATTGGCCCGAAACGGATGTGTTTGGCAACGTGAATAACGACGTACCGGAAAGCATCTTGTTTGGCGATGATTGGAACGGTGTGTTTCTCACTTCCTGTGAGGATTTGGATTTCGGTGTCAAAAGTTGGCATACAGATAGAGGACATGACTTTTTCCAAGACATTGACGATTTATTTGTTACAGATCCGCTTCTTGCTCTTTGA 918 0.5109 MSTMKYTHHLNRTKLVIPAEEHPLKQPFPRVVRISVTDTDATDSSSSDEEQGFRSSTRHRHKKFVNEIVIDSCTSEIDGVVSRKRSRAKSSAPVKDRVPASRRVSSGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPHALTNIITPPTARQCSPENQKPPPAVVTGGYNSGEESQNKNLFSPTSVLQCCSLSEEGESVKCESLFPIPSDIQFDLQGYWPETDVFGNVNNDVPESILFGDDWNGVFLTSCEDLDFGVKSWHTDRGHDFFQDIDDLFVTDPLLAL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi57g00012 305 MobiDBLite consensus disorder prediction 168 198 - -
Gabi57g00012 305 MobiDBLite consensus disorder prediction 83 109 - -
Gabi57g00012 305 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Gabi57g00012 305 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Gabi57g00012 305 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 217 - -
Gabi57g00012 305 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Gabi57g00012 305 CDD AP2 108 164 IPR001471 GO:0003700|GO:0006355
Gabi57g00012 305 SUPERFAMILY DNA-binding domain 109 165 IPR016177 GO:0003677
Gabi57g00012 305 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Gabi57g00012 305 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Gabi57g00012 305 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Gabi57g00012 305 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Gabi57g00012 305 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi57g00012 Gabi-Chr57 97793 99768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi57g00012 4 305 AP2-EREBP Transcription Factor Family AT4G23750 42.059 1.59e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi57g00012 AP2 6.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi57g00012 - - gmx:100783772 336.65