Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi57g00011 ATGCAGCAGGAGCAAAGCAGTGTGAATGAACTGAACAAGCAGAAAATGGAATTCCCACGCATTTTGTGTTCCATTTACCTGGTGGTGGGTTTGATGCTGTGGCAAGGAAATGCAGAACCAGTTGAAGATAAGCGAGCTTTGTTGGATTTTGTGAACAAGTTCCCTCCTTCTCGTGCTCTGAATTGGAATAAGAGTTCTTCCCTTTGTACCACTTGGATTGGAGTGACTTGTAACGAAGATAAGTCCCAAGTTATAGCCATTCGATTGCCAGGGTTTGGATTTCATGGCACCATTCCTCCCAATACAATAAGCCGCATCACATCACTCCAAATATTGAGCCTCAGATCCAACTATATAAGTGGCCATTTTCCTTCTGATTTTTCTAATCTCAAGAACCTTTCTTTGCTTTATCTTCAATTCAACAATTTCACAGGTCCTTTGCCTGACTTCTCTGCTTGGAAAAATCTCTCTGTTGTCAATTTGTCCAATAACCTTTTCAATGGCACCATTCCCCTCTCGCTTTCCAATTTGACTGAGCTTGCTGTTTTGAATCTTGAAAACAACTTGCTTTCTGGTGAAATCCCTGATCTCAAGTCGCCTATGTTGCAGCAACTGAATTTGTCTAACAACAGTTTGCACGGTGGTGTTCCTATCTCCCTCCAGAGGTTTCCTACGTCAGCATTCGTTGGAAACAATGTTTCTCTTGGAAGCTCTCCTACCATTTTCCCTCTAACTATTCCCTCTTCCCAACCATGTTGTTCTAAATCTAACAAACGTAATAGAAGGCTTGTGTTGGGAGTTATTGTTGCTGGTGCTGTTCTAGGCCTTGCAGCATTCCTTGTTTTTATCTTTGTATGCTGCTCAAGAAGGAAGGATGGAGATGCCTTAGCTGGGAAGTTGCAGAAGGGAGAAATGTCTCCGGAGAAAGTAGTCTCAAGGAACCAGGATGCAAATAATAACCTTGTTTTCTTTGAGGGATGTAATTATGCCTTTGACTTGGAGGATTTGTTAAGGGCTTCTGCTGAGGTACTTGGTAAGGGAACATTTGGTGCTGCTTACAAGGTCATACTAGAGGATGCAACCACAGTTGTTGTCAAGAGGTTAAAGGAGGTAGCTGTTGGAAAGAAGGATTTTGAGCAACACATGGATATGGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTCAAGGCATATTACTATTCCAAAGATGAGAAATTGATGGTATATGATTACTACAGTCAGGGGAGTGTCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAGGGTGGCTTTAGATTGGGATACTAGAATCAAAATAGCTTTAGGAGCTGCACGAGGCCTTGCTCATATCCATTCAGAGAATGGTGGGAAACTTGTACATGGCAATATCAGATCCTCAAATATGTTTGTCAATACTAAACAGTATGGTTGTGTATCTGATCTTGGCCTAGCAAACATAATGAACTCAGTTGCCCTACCCATCTCACGAGGTGGTGCTGGTTACCGAGCACCAGAAGTTACAGACACACGGAAAGCAGCACAGCCTTCAGATGTTTACAGCTTTGGTGTGGTGTTACTTGAGCTTCTGACTGGGAAATCCCCTCTCCACCCAACTGGTGGCGATGATGATATTGTTCACCTAGTTAGGTGGGTTCATTCAGTAGTGAGAGAGGAGTGGACAGCTGAAGTATTTGACTTGGAACTTATGAGATATCCTAATATAGAGGAAGAGATGGTGGAGATGTTGCAGATAGCCATGTCATGTGTAGTAAGGATGCCTGATCAGAGACCTAAGATGTCTCAAGTCATAAAGATGATAGAAAATGTCAAGCAGATTGATATAGAGAATCAGCCATGA 1863 0.4251 MQQEQSSVNELNKQKMEFPRILCSIYLVVGLMLWQGNAEPVEDKRALLDFVNKFPPSRALNWNKSSSLCTTWIGVTCNEDKSQVIAIRLPGFGFHGTIPPNTISRITSLQILSLRSNYISGHFPSDFSNLKNLSLLYLQFNNFTGPLPDFSAWKNLSVVNLSNNLFNGTIPLSLSNLTELAVLNLENNLLSGEIPDLKSPMLQQLNLSNNSLHGGVPISLQRFPTSAFVGNNVSLGSSPTIFPLTIPSSQPCCSKSNKRNRRLVLGVIVAGAVLGLAAFLVFIFVCCSRRKDGDALAGKLQKGEMSPEKVVSRNQDANNNLVFFEGCNYAFDLEDLLRASAEVLGKGTFGAAYKVILEDATTVVVKRLKEVAVGKKDFEQHMDMVGSLKHENVVELKAYYYSKDEKLMVYDYYSQGSVSALLHGKRGEDRVALDWDTRIKIALGAARGLAHIHSENGGKLVHGNIRSSNMFVNTKQYGCVSDLGLANIMNSVALPISRGGAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPLHPTGGDDDIVHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSQVIKMIENVKQIDIENQP 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi57g00011 620 Pfam Protein kinase domain 341 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi57g00011 620 SUPERFAMILY Protein kinase-like (PK-like) 342 609 IPR011009 -
Gabi57g00011 620 SUPERFAMILY L domain-like 54 222 - -
Gabi57g00011 620 Gene3D Transferase(Phosphotransferase) domain 1 414 619 - -
Gabi57g00011 620 FunFam pollen receptor-like kinase 1 307 412 - -
Gabi57g00011 620 Pfam Leucine rich repeat N-terminal domain 42 78 IPR013210 -
Gabi57g00011 620 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 619 - -
Gabi57g00011 620 Gene3D Phosphorylase Kinase; domain 1 304 412 - -
Gabi57g00011 620 ProSiteProfiles Protein kinase domain profile. 338 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi57g00011 620 FunFam Probable inactive receptor kinase RLK902 40 198 - -
Gabi57g00011 620 ProSitePatterns Protein kinases ATP-binding region signature. 344 375 IPR017441 GO:0005524
Gabi57g00011 620 Gene3D Ribonuclease Inhibitor 42 151 IPR032675 -
Gabi57g00011 620 Gene3D Ribonuclease Inhibitor 152 240 IPR032675 -
Gabi57g00011 620 PANTHER OS05G0588300 PROTEIN 25 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi57g00011 Gabi-Chr57 89597 91781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi57g00011 32 620 Receptor kinase-like Gene Family AT4G23740 62.583 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi57g00011 Pkinase 6.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi57g00011 - - gmx:100814524 899.812