LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi577g00013	ATGGCTGTTGCTGAGAATGGTGGGGCAAAAATCGGGTCTTCGGGTCAAAATTCGAACAGCGGTGGTGTAGTGTCAGCTGACTCAAACGAGGTGGAGAAATTGAAAACCAGAAGCGATCAGAATCTGGACGGTGTTTTAAACCATCAACACCAAAATGGAGTTCCGAGCAATATATCAGTTTCTAACAGTAATTACAACTACAACGCTCAAATGGGTCAGATGCTCGCAAATGGGGTTCAGAACCAGCAATTGGTGGTGAATAATGAAGGGTATGGGACTAACGGGGTTGGAAATGGGGAGAACGGGAACGAGTCTTTCAAGCGTGAGATGAGGGATTTGGAAGAACTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTTCCCACATGGGCCACATCACTAACAAATAATCATGGCTACTTAGCTGGACCTGGTGCTGGGTTTGGTTACGCTAACAATTTTATGCTCCATGATAATTATGGCAATGATAATGGGCAAACTAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGGGTGAACAATAAAATGGATGTGGAGAATAGGGAAGAGATGATTCGTAGGACGGTTTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAGCTGGCAGGTCTCTTTCTTAATTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCTAACTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAATGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCTACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAACATCGACAAGAAGCTTACACAAGCAGATGTGAAACACTTCTTTGAATGTATTTGTGGAGAGGTTCAAAGGTTGAGGCTTCTTGGGGACTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCACAATGGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGTGGTGTGGTTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGATCTCGAGCTCCTCGTACTTCTATGCCCTGA	1152	0.441	MAVAENGGAKIGSSGQNSNSGGVVSADSNEVEKLKTRSDQNLDGVLNHQHQNGVPSNISVSNSNYNYNAQMGQMLANGVQNQQLVVNNEGYGTNGVGNGENGNESFKREMRDLEELLSKLNPMAEEFVPTWATSLTNNHGYLAGPGAGFGYANNFMLHDNYGNDNGQTNRRRKNGYNPGKRRVNNKMDVENREEMIRRTVYVSDIDQLVTEEQLAGLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESANAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFECICGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALSCSGVVLGSLPIRVSPSKTPVRSRAPRTSMP	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi577g00013	383	FunFam	Polyadenylate-binding protein-interacting protein 11	161	275	-	-
	Gabi577g00013	383	MobiDBLite	consensus disorder prediction	1	29	-	-
	Gabi577g00013	383	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	200	263	IPR000504	GO:0003723
	Gabi577g00013	383	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	297	364	IPR000504	GO:0003723
	Gabi577g00013	383	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	115	376	-	-
	Gabi577g00013	383	MobiDBLite	consensus disorder prediction	10	26	-	-
	Gabi577g00013	383	SUPERFAMILY	RNA-binding domain, RBD	168	274	IPR035979	GO:0003676
	Gabi577g00013	383	CDD	RRM2_CID8_like	291	372	IPR034825	-
	Gabi577g00013	383	MobiDBLite	consensus disorder prediction	161	183	-	-
	Gabi577g00013	383	CDD	RRM1_CID8_like	196	275	IPR034823	-
	Gabi577g00013	383	SMART	rrm1_1	199	269	IPR000504	GO:0003723
	Gabi577g00013	383	SMART	rrm1_1	296	367	IPR000504	GO:0003723
	Gabi577g00013	383	SUPERFAMILY	RNA-binding domain, RBD	286	377	IPR035979	GO:0003676
	Gabi577g00013	383	Gene3D	-	282	378	IPR012677	-
	Gabi577g00013	383	Gene3D	-	158	275	IPR012677	-
	Gabi577g00013	383	FunFam	Polyadenylate-binding protein-interacting protein 10	289	367	-	-
	Gabi577g00013	383	Pfam	Ataxin-2 C-terminal region	117	130	IPR009818	-
	Gabi577g00013	383	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	198	273	IPR000504	GO:0003723
	Gabi577g00013	383	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	295	371	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi577g00013	Gabi-Chr577	152489	156719	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi577g00013	197	359	Eukaryotic Initiation Factors Gene Family	AT1G34140	26.946	1.45e-10	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi577g00013	-		-	gmx:106794116	565.844