Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi577g00013 ATGGCTGTTGCTGAGAATGGTGGGGCAAAAATCGGGTCTTCGGGTCAAAATTCGAACAGCGGTGGTGTAGTGTCAGCTGACTCAAACGAGGTGGAGAAATTGAAAACCAGAAGCGATCAGAATCTGGACGGTGTTTTAAACCATCAACACCAAAATGGAGTTCCGAGCAATATATCAGTTTCTAACAGTAATTACAACTACAACGCTCAAATGGGTCAGATGCTCGCAAATGGGGTTCAGAACCAGCAATTGGTGGTGAATAATGAAGGGTATGGGACTAACGGGGTTGGAAATGGGGAGAACGGGAACGAGTCTTTCAAGCGTGAGATGAGGGATTTGGAAGAACTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTTCCCACATGGGCCACATCACTAACAAATAATCATGGCTACTTAGCTGGACCTGGTGCTGGGTTTGGTTACGCTAACAATTTTATGCTCCATGATAATTATGGCAATGATAATGGGCAAACTAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGGGTGAACAATAAAATGGATGTGGAGAATAGGGAAGAGATGATTCGTAGGACGGTTTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAGCTGGCAGGTCTCTTTCTTAATTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCTAACTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAATGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCTACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAACATCGACAAGAAGCTTACACAAGCAGATGTGAAACACTTCTTTGAATGTATTTGTGGAGAGGTTCAAAGGTTGAGGCTTCTTGGGGACTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCACAATGGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGTGGTGTGGTTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGATCTCGAGCTCCTCGTACTTCTATGCCCTGA 1152 0.441 MAVAENGGAKIGSSGQNSNSGGVVSADSNEVEKLKTRSDQNLDGVLNHQHQNGVPSNISVSNSNYNYNAQMGQMLANGVQNQQLVVNNEGYGTNGVGNGENGNESFKREMRDLEELLSKLNPMAEEFVPTWATSLTNNHGYLAGPGAGFGYANNFMLHDNYGNDNGQTNRRRKNGYNPGKRRVNNKMDVENREEMIRRTVYVSDIDQLVTEEQLAGLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESANAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFECICGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALSCSGVVLGSLPIRVSPSKTPVRSRAPRTSMP 383
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi577g00013 383 FunFam Polyadenylate-binding protein-interacting protein 11 161 275 - -
Gabi577g00013 383 MobiDBLite consensus disorder prediction 1 29 - -
Gabi577g00013 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 263 IPR000504 GO:0003723
Gabi577g00013 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
Gabi577g00013 383 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 115 376 - -
Gabi577g00013 383 MobiDBLite consensus disorder prediction 10 26 - -
Gabi577g00013 383 SUPERFAMILY RNA-binding domain, RBD 168 274 IPR035979 GO:0003676
Gabi577g00013 383 CDD RRM2_CID8_like 291 372 IPR034825 -
Gabi577g00013 383 MobiDBLite consensus disorder prediction 161 183 - -
Gabi577g00013 383 CDD RRM1_CID8_like 196 275 IPR034823 -
Gabi577g00013 383 SMART rrm1_1 199 269 IPR000504 GO:0003723
Gabi577g00013 383 SMART rrm1_1 296 367 IPR000504 GO:0003723
Gabi577g00013 383 SUPERFAMILY RNA-binding domain, RBD 286 377 IPR035979 GO:0003676
Gabi577g00013 383 Gene3D - 282 378 IPR012677 -
Gabi577g00013 383 Gene3D - 158 275 IPR012677 -
Gabi577g00013 383 FunFam Polyadenylate-binding protein-interacting protein 10 289 367 - -
Gabi577g00013 383 Pfam Ataxin-2 C-terminal region 117 130 IPR009818 -
Gabi577g00013 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 273 IPR000504 GO:0003723
Gabi577g00013 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 371 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi577g00013 Gabi-Chr577 152489 156719 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi577g00013 197 359 Eukaryotic Initiation Factors Gene Family AT1G34140 26.946 1.45e-10 60.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi577g00013 - - gmx:106794116 565.844