Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi577g00013 | ATGGCTGTTGCTGAGAATGGTGGGGCAAAAATCGGGTCTTCGGGTCAAAATTCGAACAGCGGTGGTGTAGTGTCAGCTGACTCAAACGAGGTGGAGAAATTGAAAACCAGAAGCGATCAGAATCTGGACGGTGTTTTAAACCATCAACACCAAAATGGAGTTCCGAGCAATATATCAGTTTCTAACAGTAATTACAACTACAACGCTCAAATGGGTCAGATGCTCGCAAATGGGGTTCAGAACCAGCAATTGGTGGTGAATAATGAAGGGTATGGGACTAACGGGGTTGGAAATGGGGAGAACGGGAACGAGTCTTTCAAGCGTGAGATGAGGGATTTGGAAGAACTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTTCCCACATGGGCCACATCACTAACAAATAATCATGGCTACTTAGCTGGACCTGGTGCTGGGTTTGGTTACGCTAACAATTTTATGCTCCATGATAATTATGGCAATGATAATGGGCAAACTAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGGGTGAACAATAAAATGGATGTGGAGAATAGGGAAGAGATGATTCGTAGGACGGTTTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAGCTGGCAGGTCTCTTTCTTAATTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCTAACTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAATGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCTACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAACATCGACAAGAAGCTTACACAAGCAGATGTGAAACACTTCTTTGAATGTATTTGTGGAGAGGTTCAAAGGTTGAGGCTTCTTGGGGACTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCACAATGGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGTGGTGTGGTTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGATCTCGAGCTCCTCGTACTTCTATGCCCTGA | 1152 | 0.441 | MAVAENGGAKIGSSGQNSNSGGVVSADSNEVEKLKTRSDQNLDGVLNHQHQNGVPSNISVSNSNYNYNAQMGQMLANGVQNQQLVVNNEGYGTNGVGNGENGNESFKREMRDLEELLSKLNPMAEEFVPTWATSLTNNHGYLAGPGAGFGYANNFMLHDNYGNDNGQTNRRRKNGYNPGKRRVNNKMDVENREEMIRRTVYVSDIDQLVTEEQLAGLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESANAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFECICGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALSCSGVVLGSLPIRVSPSKTPVRSRAPRTSMP | 383 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi577g00013 | 383 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 161 | 275 | - | - | |
Gabi577g00013 | 383 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Gabi577g00013 | 383 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 200 | 263 | IPR000504 | GO:0003723 | |
Gabi577g00013 | 383 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 297 | 364 | IPR000504 | GO:0003723 | |
Gabi577g00013 | 383 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 115 | 376 | - | - | |
Gabi577g00013 | 383 | MobiDBLite | consensus disorder prediction | 10 | 26 | - | - | |
Gabi577g00013 | 383 | SUPERFAMILY | RNA-binding domain, RBD | 168 | 274 | IPR035979 | GO:0003676 | |
Gabi577g00013 | 383 | CDD | RRM2_CID8_like | 291 | 372 | IPR034825 | - | |
Gabi577g00013 | 383 | MobiDBLite | consensus disorder prediction | 161 | 183 | - | - | |
Gabi577g00013 | 383 | CDD | RRM1_CID8_like | 196 | 275 | IPR034823 | - | |
Gabi577g00013 | 383 | SMART | rrm1_1 | 199 | 269 | IPR000504 | GO:0003723 | |
Gabi577g00013 | 383 | SMART | rrm1_1 | 296 | 367 | IPR000504 | GO:0003723 | |
Gabi577g00013 | 383 | SUPERFAMILY | RNA-binding domain, RBD | 286 | 377 | IPR035979 | GO:0003676 | |
Gabi577g00013 | 383 | Gene3D | - | 282 | 378 | IPR012677 | - | |
Gabi577g00013 | 383 | Gene3D | - | 158 | 275 | IPR012677 | - | |
Gabi577g00013 | 383 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 289 | 367 | - | - | |
Gabi577g00013 | 383 | Pfam | Ataxin-2 C-terminal region | 117 | 130 | IPR009818 | - | |
Gabi577g00013 | 383 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 198 | 273 | IPR000504 | GO:0003723 | |
Gabi577g00013 | 383 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 295 | 371 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi577g00013 | Gabi-Chr577 | 152489 | 156719 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi577g00013 | 197 | 359 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 26.946 | 1.45e-10 | 60.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi577g00013 | - | - | gmx:106794116 | 565.844 |