LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi577g00012	ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCCAGTCAGAATTTGGACAACAGTGTAGTGTCATCGGACTCGAGTGAGGTGGAGAAATCGAAACCCAGAACTGGTGATCAGAATCTGAACAACAACAACAACAACAACAACGGTGTGTTCAATCACCAACACCATGATAGAGTTCCGAGCACTTTGTCAGTTCCTAACAATAATTACAACTACAAGGCTCAAATGGGTCAGATGCACGCAAATGGGGTCCAGAACCAGCAATTGGTGGTGAACAATGATGAGTATGGGAATGAGGAGAACGGGAGCGAGTCTTTCAAGCGTGATATGAGGGATTTGGAAGAACTTTTATCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCAACAGGACTAACAAATCATAATGGCTACTTAGCTGGACCTGGTGCTGGGTTTGGTTACCCTAACAATTTTATACTCCTCAATAATTTTGGTAATGCTAACGGCCAAACTAACAGAAGGAGGAAGAACGGCTATAATAATGGGAAGCGAAGAGTGAATCATAAAATAGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACCGTCTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTTGCCTTCGTTGAGTTTACAGATGAAGAAGGTGCAAGGACTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATCGCACCTGTTAATCCGACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAACATCGACAAGAAGCTTACTCAAGCTGATGTCAAACGTTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCAGCCCTAAGCTGTAGTGGTGTGGTTTTGGGCTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTCCGGTCTCGTGCTCCTCGTACTTCTATGCACTGA	1149	0.443	MAVAENVGAKIGSSSQNLDNSVVSSDSSEVEKSKPRTGDQNLNNNNNNNNGVFNHQHHDRVPSTLSVPNNNYNYKAQMGQMHANGVQNQQLVVNNDEYGNEENGSESFKRDMRDLEELLSKLNPMAEEFVPTGLTNHNGYLAGPGAGFGYPNNFILLNNFGNANGQTNRRRKNGYNNGKRRVNHKIDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKRFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSCSGVVLGSLPIRVSPSKTPVRSRAPRTSMH	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi577g00012	382	MobiDBLite	consensus disorder prediction	1	69	-	-
	Gabi577g00012	382	SUPERFAMILY	RNA-binding domain, RBD	285	376	IPR035979	GO:0003676
	Gabi577g00012	382	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	296	363	IPR000504	GO:0003723
	Gabi577g00012	382	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	199	262	IPR000504	GO:0003723
	Gabi577g00012	382	MobiDBLite	consensus disorder prediction	9	28	-	-
	Gabi577g00012	382	FunFam	Polyadenylate-binding protein-interacting protein 11	161	274	-	-
	Gabi577g00012	382	CDD	RRM1_CID8_like	195	274	IPR034823	-
	Gabi577g00012	382	SMART	rrm1_1	198	268	IPR000504	GO:0003723
	Gabi577g00012	382	SMART	rrm1_1	295	366	IPR000504	GO:0003723
	Gabi577g00012	382	Pfam	Ataxin-2 C-terminal region	119	133	IPR009818	-
	Gabi577g00012	382	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	117	375	-	-
	Gabi577g00012	382	MobiDBLite	consensus disorder prediction	37	69	-	-
	Gabi577g00012	382	FunFam	Polyadenylate-binding protein-interacting protein 10	288	366	-	-
	Gabi577g00012	382	SUPERFAMILY	RNA-binding domain, RBD	177	274	IPR035979	GO:0003676
	Gabi577g00012	382	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	294	370	IPR000504	GO:0003723
	Gabi577g00012	382	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	197	272	IPR000504	GO:0003723
	Gabi577g00012	382	CDD	RRM2_CID8_like	290	371	IPR034825	-
	Gabi577g00012	382	Gene3D	-	281	378	IPR012677	-
	Gabi577g00012	382	Gene3D	-	159	274	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi577g00012	Gabi-Chr577	99938	105096	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi577g00012	196	358	Eukaryotic Initiation Factors Gene Family	AT1G34140	28.144	5.60e-12	64.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi577g00012	-		-	gmx:106794116	614.764