Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi577g00010 ATGTCAGAGTCAAGGCAAAACAAGATGATGAATCCAAACGTTGCCAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGATTGGCTTGGGAGACTAAGAGAGACACTCTAAAACATTATTTTGATCAGTTTGGTGAGATCTTAGAGGCTGTTGTCATCACTGACAAAAACACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAAGGACCCAGATTCTGCAATAAGGGCTTGCCAGAATCCCTATCCCTTGATTGATGGAAGGAGAGCTAATTGTAATATTGCAGCTTTTGGTGCACAAAAATTTGATCCATCTATACAAGGAAGGCAGAAATTCAGTAGTCCTTCATGGAATTCGGTACCAATCCCATTTCAAGGCACTTCCAATTATTATAATCAGCATATGCCCCACTATACATTCCCGAATCTAGCCTACAGGTATCCTGGTTATCCTTCCCCACAAGAAATTTATGAAATGAACTACTATAATGTATATGGTGGACAGCAGCTTCCAATTCGCTTAGTTCCAGCATATAGCCAACCCTTTTATGGCCTTAGTAGACAGTTTATTCCAACAACATATGTCAAAAAGACACAGTTCCCTGATAAGTCATCTCAGGAGTTTACAGTTGTTAGCCTATCAGAACCTATTGCAGCTACTTCTTCAATTTCCAGCACTGCAGGATTAATCACTGGAACAGCAGCTGCAACAGGAGTACTAGGATCCCCCCAAGAACAGAAACGTGATGAGGACTAG 768 0.4102 MSESRQNKMMNPNVAKQVGDTTYTKIFVGGLAWETKRDTLKHYFDQFGEILEAVVITDKNTGRSKGYGFVTFKDPDSAIRACQNPYPLIDGRRANCNIAAFGAQKFDPSIQGRQKFSSPSWNSVPIPFQGTSNYYNQHMPHYTFPNLAYRYPGYPSPQEIYEMNYYNVYGGQQLPIRLVPAYSQPFYGLSRQFIPTTYVKKTQFPDKSSQEFTVVSLSEPIAATSSISSTAGLITGTAAATGVLGSPQEQKRDED 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi577g00010 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Gabi577g00010 255 SMART rrm1_1 25 97 IPR000504 GO:0003723
Gabi577g00010 255 Gene3D - 1 114 IPR012677 -
Gabi577g00010 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Gabi577g00010 255 PANTHER BOULE-RELATED 7 207 - -
Gabi577g00010 255 CDD RRM_RBM24_RBM38_like 24 99 - -
Gabi577g00010 255 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi577g00010 Gabi-Chr577 91837 93882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi577g00010 20 100 C2H2 Transcription Factor Family AT2G19380 43.210 2.80e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi577g00010 - - gmx:100788634 402.519