Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi577g00007 ATGGTGTGTGACTTTCGTATTAAAGGGTGCTGTCTTCGTCAACCACCACCGTCCGGTGGAGTTTTTCGGCAAACCACATACCAGCGTGCTCGTCTTGGAAGCGCGATCCCAACCGCACCGGCTGCACCTCCATCGGAGCCCTCACGCGCCCACACGCGCGCGTGCAAGCTCTGGTCATCCTCTCCCCAAGGCGGCGCGTGGGACCTCCTCTCCGGCCGCAGCTGGTGGCGTTCTCCTCGTCTCCCTGTGACGGTTCTGGATCTGGTCCTGAATTATACATCTCATCTCACCACTAAGGCTGAATCTGCGGCGGAAAAGGAGCGCACACGGTGGAAAATGATTGATGCTCAGCTGTATAGCCTCATTAAAGCTACTCTTCATCCGTTTATTAAGCAGATTTTTCGACCTGCTGTTACTTGCATTTGGAGTCAGGCAAAGGCACTTTACACCAGTGATACCCAGAGACTCTATGGTGTATGTCAAAAATTGATGACTACATATGCTCCTCGGGACTTCAATTGTCCTATGGCTAGATATTTGGGGAAAGTTCAGAGTCTACTTCATGATCTTAATGAGCTTCTACCTCTCAATGGTGATGTTAATAAGGAACAGGAACAGCGTAATACACTGTTTATGTTGTTCATTTTATATGGTTTGCCTGATCATTTGTCTGCCAATCGATATCAAATTGTGGGATCTGCTACAGTTCCTACACTGGATTCTGTGATGTCTACCTTGCTTCGAATTCACTCTAAGCCTTCTCCGTCATCAGCACCTCCTATGATGCATATACCCCCAGCGGATTCTGTTGACTCTTCCGCTTTTGCTGATCAAGGATATGGTCACGGACGTCGAGAAGATTCTGTTGACCCTTCAGCTTTTGTTGTTCAAGGGTATGGTCGTGGACGTCGATTCTCTAAAGGAAAGCTATTATGCACTCATTGTCATCAGACCAATCATACTGTTGACCGCTGTTGGAAGCTTCATGGCAGGCCACCTCCACCTTCTCGGAATGCTCATATTGCTCAGGCTTTCTCTAGTACCTGTGCTCCAGAGTTACCTTCCAGTGCACAACCTCCAGCTGCTCTTCTGAATGAATTTGTGATTTGGTGGTCTGAAAAGCAAACATCAGGTCCTACTGCATCCATTGCTCCCTCTGGTGACCTTCTTTACCTTCCGTCTTTACCTGTCCATGTTTCTGACTATCCTTCTATCACCTCTTCTGTTGATGAGATCGAGCATAGTTCGTCAAATGTCTCTGTGGACTCACATTCAACTGCATCTCCCACCACGACGTCGGTCCCACCTTCAAATAGTGACCTTCCCATTGCTCTTCGTAAGGCACAAAAACGTGTAACCAAACACAGCCTACTTGTACGCATGATGATGCACCTTCGACTTACATTGTTCCTATGTTTTCTATTACATCATTTTCATGGCATCACATGCAACAATGAGACAGATAGAGATGCCCTTCTTTCTTTCAAATTCCAAGTAACAGACCCAAATAATGCTCTATCTAGGTGGTATGCAGATTCCAATCACTGTACATGGAATGGTATCACCTGCTCCAAAGTTGGAACAAGAGTCCAATCTGTCACCCTACCAGGACGTGGCCTCTCTGGTAAACTACCCTCTCAGCTTTCCAATCTCACTTACCTACATTCCCTTGACCTTTCCAACAACAAATTTCATGGTCAAATTCCCCAAGAGTTTGAGCATCTCTCATTTCTTAATGTGATTAACTTTGCTTACAACAATCTCAGTGGTACACTTCCACAACAATTGGGCCATCTTCACCGTCTTAAAAGTTTAGACTTGTCTGTCAATAATCTCACAGGTAAAGTCCCTCCAGAATTTGGCAATCTCTTGTCTCTTGAGTATCTTGCCTTGGCAAGGAACATGTTAGAGGGTGAGGTTCCAAGTGAACTGGGTAATCTCCACAATCTTTCCAAACTTCAACTCTCAGAGAACAATTTCACTGGCGAGTTTCCCACTTCTATCTTCAAACTCTCATCTTTAGTCTTCTTATCCGTGACAAAGAACAATCTATCAGGCAAGTTACCACAAAATTTGGGGCATGCCCTTCCAAATCTAAGGACTCTTACCCTGGCTGTCAATAGGTTTGAAGGGGTGATTCCTAATTCCATATCCAATGCCTCACATCTTGAAAACATTGATCTTCGGTACAATAATTTTCATGGGCCCATGCCTCTGTTCAACAACTTGAAAAATCTGACCCAACTAACTCTTGGTAATAATTCTCTCTCTTCCACGACGTCATTGAATGTTGAGTTCTTTGATTCCCTTAGAAACTCCACTCAGTTGCAAATTCTCATGATCAATGATAATCATTTGGCTGGGGAGCTTCCAAGTTCTGTTGCGAATCTGTCTAGCAATCTTCAACATTTCTGTGTTTCTAATAATTGGCTTACTGGCAGAATTCCTCAGGGAATGAAGAAATTTCAAAATCTCATTTCCTTGTCTTTTGAAAATAATTATTTCAGTGGAGAGTTACCATCAGATATTGGAGCTCTAAATAAGCTGGGGCAGCTTGTGATATACGGAAATAGATTGTCTGGGGAAATTCCAGACATTTTTGGCAATTTTACAAATCTGTTTAGTCTTGGAATGCACAAAAACCAGTTCTCAGGTAGAATACACTCGAGTATTGGACAATGCAAAAGATTGAGTTTTCTTTACCTCGGGATGAATAGGCTTGTTGGGACCATACCAATGGAGATTTTTCAGCTTTCTGGCTTAAGAGGCTTGTCCTTAACAGGAAACTCTCTGCATGGTTCACTTCCTCCGGAGATCAACTCCATGAAGCAGCTTGAGACCATGGATATTTCCAACAACCAGTTCTCAGGGTACATTCCTAAGGAAATAGATGGCTGTTCTAGCTTGATTTCACTTGTGATGGCAAGAAACAAATTCAGCGGCTCAATCCCAAGTAGTCTAGGGAACTTAACATCCCTTGAGACTTTGGATCTATCATCAAACAATCTCACTGGCCCTATTCCTCAAAGTTTAGAAAAGCTCAGTTATATGGTGAGATTAAATTTGTCTTTCAACCATTTGGAAGGAGAGGTTCCTATGAAAGGTGTTTTTATGAACCTTAGCCAGGTTGATCTCCGAGGTAACAACAAACTCTGTGGCCTTAACAAGGAATTTGTGCAAACGTTGGGAGTGTTACTCTGTGTTGCAGGTAAAAAGAAGAGAAATGTTTTACTTCCAATCATACTTGCAGTTACAGGTGCTATTGCTTTGTTCATTTCAATGCTGTGTCTACTGTGGATAATAATGTCACGGAAGAAGAAAAGAAAGGAGAGGAAAACCAGTTTGTCATGTGCTCCTCCGAGGGGGTTGCCTCATTATATATCGTATTGTGATATTCGGATTGCTACAAACGATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGCTTTGGCTCTGTTTATAAGGGTGTGTTCTCCCTCAACACTGGTGAAACCACCACCCTTGCTATCAAAGTCCTGGACCTTCAACAAAGCAAAGCTTCTCAGAGTTTTAATGCAGAATGTGAAGCTTTAAAAAATGTTAGGCATCGGAACCTAGTCAAGGTTATCACTTCCTGCTCCAGTGTAGATTATAATGGACACGACTTCAAGGCCCTTGTTATGCAATTCATGCCCAACGGCAATTTGGACATGAGTTTATACCCAGAAGATGTTGAGTCAGGATCCTCTCTAACCTTGTTGCAAAGATTAAACATTGCCATTGATGTTGCTTCTGCCATGGACTACTTGCACCATGATTGTGACCCACCAGTAGTACATTGTGATCTGAAACCTGCCAATGTCCTACTAGATGAAAATATGGTTGCACATGTTGGAGATTTTGGATTGGCGAGGTTCCTTTCTCAAAATCCATCAGAGCAACAAAGCAGCACTATGGGAATGAAGGGATCAATTGGTTATATTGCTCCAGAATATGGTCTAGGAGGCAAGGCTTCAACTTGTGGCGATGTCTACAGTTTTGGGATTTTACTGCTAGAGATATTCATAGCCAAAAAACCAACTGATGAAATGTTCAAAGAAGGATTAAGCCTGAACAAATTTGTCTCGGACATGGATGAGAATCAAGTGCTGAAGGTTACTGATCCGAGGCTTATTAATGATTATGAAAATTCTACACAAAGCTCAAGCAGTGATTATCATAACGGTGTCACTGGGAGCAACAGCTGTAATAATGGTAACACAAATTGGACGCGCAAAGCTGAGGAGTGCATAGCTGCTGTGATAAGAGTTGGCTTGTCTTGTACTGCTCATCAGCCCAAAGATCGTTGCACTATGAGAGAGGTCTCAACAAAATTACAAGCAATTAGGCATTCTTTGCTGGGCTTCTAA 4389 0.4308 MVCDFRIKGCCLRQPPPSGGVFRQTTYQRARLGSAIPTAPAAPPSEPSRAHTRACKLWSSSPQGGAWDLLSGRSWWRSPRLPVTVLDLVLNYTSHLTTKAESAAEKERTRWKMIDAQLYSLIKATLHPFIKQIFRPAVTCIWSQAKALYTSDTQRLYGVCQKLMTTYAPRDFNCPMARYLGKVQSLLHDLNELLPLNGDVNKEQEQRNTLFMLFILYGLPDHLSANRYQIVGSATVPTLDSVMSTLLRIHSKPSPSSAPPMMHIPPADSVDSSAFADQGYGHGRREDSVDPSAFVVQGYGRGRRFSKGKLLCTHCHQTNHTVDRCWKLHGRPPPPSRNAHIAQAFSSTCAPELPSSAQPPAALLNEFVIWWSEKQTSGPTASIAPSGDLLYLPSLPVHVSDYPSITSSVDEIEHSSSNVSVDSHSTASPTTTSVPPSNSDLPIALRKAQKRVTKHSLLVRMMMHLRLTLFLCFLLHHFHGITCNNETDRDALLSFKFQVTDPNNALSRWYADSNHCTWNGITCSKVGTRVQSVTLPGRGLSGKLPSQLSNLTYLHSLDLSNNKFHGQIPQEFEHLSFLNVINFAYNNLSGTLPQQLGHLHRLKSLDLSVNNLTGKVPPEFGNLLSLEYLALARNMLEGEVPSELGNLHNLSKLQLSENNFTGEFPTSIFKLSSLVFLSVTKNNLSGKLPQNLGHALPNLRTLTLAVNRFEGVIPNSISNASHLENIDLRYNNFHGPMPLFNNLKNLTQLTLGNNSLSSTTSLNVEFFDSLRNSTQLQILMINDNHLAGELPSSVANLSSNLQHFCVSNNWLTGRIPQGMKKFQNLISLSFENNYFSGELPSDIGALNKLGQLVIYGNRLSGEIPDIFGNFTNLFSLGMHKNQFSGRIHSSIGQCKRLSFLYLGMNRLVGTIPMEIFQLSGLRGLSLTGNSLHGSLPPEINSMKQLETMDISNNQFSGYIPKEIDGCSSLISLVMARNKFSGSIPSSLGNLTSLETLDLSSNNLTGPIPQSLEKLSYMVRLNLSFNHLEGEVPMKGVFMNLSQVDLRGNNKLCGLNKEFVQTLGVLLCVAGKKKRNVLLPIILAVTGAIALFISMLCLLWIIMSRKKKRKERKTSLSCAPPRGLPHYISYCDIRIATNDFAAENLIGKGGFGSVYKGVFSLNTGETTTLAIKVLDLQQSKASQSFNAECEALKNVRHRNLVKVITSCSSVDYNGHDFKALVMQFMPNGNLDMSLYPEDVESGSSLTLLQRLNIAIDVASAMDYLHHDCDPPVVHCDLKPANVLLDENMVAHVGDFGLARFLSQNPSEQQSSTMGMKGSIGYIAPEYGLGGKASTCGDVYSFGILLLEIFIAKKPTDEMFKEGLSLNKFVSDMDENQVLKVTDPRLINDYENSTQSSSSDYHNGVTGSNSCNNGNTNWTRKAEECIAAVIRVGLSCTAHQPKDRCTMREVSTKLQAIRHSLLGF 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi577g00007 1462 ProSitePatterns Protein kinases ATP-binding region signature. 1145 1171 IPR017441 GO:0005524
Gabi577g00007 1462 Pfam Leucine Rich Repeat 992 1014 IPR001611 GO:0005515
Gabi577g00007 1462 ProSiteProfiles Protein kinase domain profile. 1139 1460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi577g00007 1462 SMART serkin_6 1139 1460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi577g00007 1462 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Gabi577g00007 1462 Gene3D Transferase(Phosphotransferase) domain 1 1224 1459 - -
Gabi577g00007 1462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1271 1283 IPR008271 GO:0004672|GO:0006468
Gabi577g00007 1462 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1113 1223 - -
Gabi577g00007 1462 Pfam Leucine rich repeat N-terminal domain 486 524 IPR013210 -
Gabi577g00007 1462 Gene3D Phosphorylase Kinase; domain 1 1123 1223 - -
Gabi577g00007 1462 SUPERFAMILY Protein kinase-like (PK-like) 1115 1452 IPR011009 -
Gabi577g00007 1462 SUPERFAMILY L domain-like 485 816 - -
Gabi577g00007 1462 Gene3D Ribonuclease Inhibitor 484 639 IPR032675 -
Gabi577g00007 1462 PANTHER LEUCINE RICH REPEAT KINASE 2 769 1456 - -
Gabi577g00007 1462 MobiDBLite consensus disorder prediction 416 439 - -
Gabi577g00007 1462 PRINTS Leucine-rich repeat signature 602 615 - -
Gabi577g00007 1462 PRINTS Leucine-rich repeat signature 990 1003 - -
Gabi577g00007 1462 Pfam Protein tyrosine and serine/threonine kinase 1142 1388 IPR001245 GO:0004672|GO:0006468
Gabi577g00007 1462 MobiDBLite consensus disorder prediction 416 440 - -
Gabi577g00007 1462 SMART LRR_typ_2 918 942 IPR003591 -
Gabi577g00007 1462 SMART LRR_typ_2 647 671 IPR003591 -
Gabi577g00007 1462 SMART LRR_typ_2 743 769 IPR003591 -
Gabi577g00007 1462 SMART LRR_typ_2 599 622 IPR003591 -
Gabi577g00007 1462 SMART LRR_typ_2 696 719 IPR003591 -
Gabi577g00007 1462 SMART LRR_typ_2 551 574 IPR003591 -
Gabi577g00007 1462 SMART LRR_typ_2 990 1014 IPR003591 -
Gabi577g00007 1462 FunFam Leucine-rich repeat protein kinase family protein 619 760 - -
Gabi577g00007 1462 CDD STKc_IRAK 1145 1455 - -
Gabi577g00007 1462 FunFam Leucine-rich repeat receptor-like kinase 488 597 - -
Gabi577g00007 1462 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1224 1461 - -
Gabi577g00007 1462 FunFam LRR receptor-like serine/threonine-protein kinase EFR 762 1072 - -
Gabi577g00007 1462 ProSiteProfiles Leucine-rich repeat profile. 992 1015 IPR001611 GO:0005515
Gabi577g00007 1462 SUPERFAMILY L domain-like 800 1055 - -
Gabi577g00007 1462 Gene3D Ribonuclease Inhibitor 640 738 IPR032675 -
Gabi577g00007 1462 Gene3D Ribonuclease Inhibitor 739 1059 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi577g00007 Gabi-Chr577 48392 65308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi577g00007 474 1457 Receptor kinase-like Gene Family AT3G47570 40.842 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi577g00007 PK_Tyr_Ser-Thr 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi577g00007 - - gmx:100776054 1472.22