Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi56g00007 ATGCAGACAATAGCGGTTATTCCTGTCCTTCCCCACGGGGTTGTTCAACTTGGTTCTTTCTTGCCTATAATGGAAAATATGGCATTCGTGAGTGATGTGAAGAGCTTGATCTTGCAATTGGGATGTGTTCCTGGTGCCCTTCTATCTGAAGACTATTCAGCAAAAAATTATACTGAAAGACTTGCGGGACCTGTGACTGTTGGTGTGCCTGTGTCTGTTGATCCACCAGTCATTACGTCAAACTGCACTCACTCAGTAGCTAATGGTTCTAACCAACCAAGTAATTCATATCATGCTTCAAGGTCTATTGCTCAACCACCTCATCCTTTAAGGGGAGAAATAAATAATTACCAGGGTTCTGTATTGACACCTCAAACCCATAACCTAAATCAGATATTTGATAACCTTTGCCAACCAAAGGCTCATTCAATGATTAAAACAAGTGTCACTGGTCAACGAGAGAATACAGTTGTGGAGACTGAACCTGGAGTAATACCTGCAAATCTCGATTCCTCTATGTCACAGCGTTCTGTTTCATATAATGCAAGGCCTGCGTTCAATCAATTAGCTGGTTTCGGTCAATCAAGTCTGAGTGACTGCAGCGTTAAATATATGGAACAACAAATCTTATCAGGTGTTGGGAGGCGGAGTCATGTTAATCCTACTATGAATCCATCAAGTACCGTAAATATGTCTCAACTGAAAACAGATGGAGGCCAAATTTTTGAACAGAGCCAGAGTTCTGTTAGCACTTCCCTAATTGGAGGAATCCCAATACATAGCAGGATGGGTAATCTTCTGAGGACAAATATGATTAACTGCTCGGTTTCAAACCTTCCCAAAGTATCCAATGCTGATTTTTCTGGAACGCAAAAAGTTGGGTTTGGACTTCAAAATGATAATTCAACTGAAGCTGGGACTTATTCTCTGCCTAATTTGACTAGTCAATCATTTTCCAGTCACATGCATCTAGAAGGCCTTGATCAGAAGAATCTTCCTATAGATTTAAAACATGGTTTCAATGCTTTGGCTTCAACAGATCAAAATATAGATGATGATTTGCTTCAGGCCCTTAAGATCCCATCTCTCCATCTTGAGGAGCATGTGCCTATGAGTGATCGCATCCCCGGCTTTGTTCAAGATTGCTTCAATAAAGATGGTTCTAGTCAACATATGATGAAAGTGAATGCTAAACAAGAAGAAACTTGTATTCAACTTCCATCAGGAGATGACCTCTTTGATGTTCTAGGTGTGGATTTCAAAAGGAAACTACTGAATGGAAACTGGAATAAGCTATTCGCGGATGAATCAGATGCCAATACAGAAATTCTGGATAAAAAGGCAACATGTATGAATTTGCAGGGTATAATAGGTCATGAGAATAGTTTTTCAGCTAATGAAGCGATATCAGACAGTAGCATCTTCTCTGGGATGGGCACTGACCACCTCTTAGATGCTGTGGTGTCAAGGGCTCAATCTGCTGCAAAACTGAATTCTGATGAAATGTCTTGTCGGACAACAGTGACAAGGATTAATCCCACCTGTGTCCCCTCTCCTGCCTGCAAGCAGGTTATGTCTGATCATGGTGTCCAGGGTGGATTGTTTGATTTTCCTAAGACGGGGGTTAAAACTGGTGCTGTGGAAACTAGTTCTCTTAGGTGTAGCAAGGATGATACTGGAAACTGTTCTCAAACTACTTCCATATATGGGTCTCAACTTAGTTCATGGGTTGAGAATGGCAGCAATGTGAAGCGTGAAAATAGCGTTTCGACTGGATACTCTAAGCGGCCAGATGAAGTTTGCAAATCGAATCGTAAAAGGCTTAAACCTGGAGAGAACCCCAGGCCTCGCCCTAAAGATCGCCAAATGATTCAAGATCGTGTGAAAGAGTTACGGGAAATTGTGCCAAATGGATCCAAATGTAGCATAGATGCACTTCTAGAACGAACCATCAAGCATATGCTTTTCTTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGATTGTTAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAAGGAGGAGCTACATGGGCATATGAGGTTGGCTCACAATCAATGGTTTGCCCTATCATAGTTGAAGATCTCAATCCTCCTCGTCAGATGCTAGTGGAGATGCTTTGTGAGGAACGGGGTTTCTTTCTGGAAATCGCTGACTTAATCAGAGGGTTAGGTTTAACCATCTTGAAGGGGGTTATGGAAGCTCGCAATGACAAGATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACGAGGATGGAAATATTTATGTCCCTGGTTCGTCTTTTGGAGCAAACTGTAAAGGGTGGTGCATCTTCATCCAATGCTGTTGATAGCAACATGATGATTTATCATTCTTTCCCACAAGCTACCCAGATACCAGCAACTGGTAGGCCTAGTAGTTTGCAATGA 2466 0.4189 MQTIAVIPVLPHGVVQLGSFLPIMENMAFVSDVKSLILQLGCVPGALLSEDYSAKNYTERLAGPVTVGVPVSVDPPVITSNCTHSVANGSNQPSNSYHASRSIAQPPHPLRGEINNYQGSVLTPQTHNLNQIFDNLCQPKAHSMIKTSVTGQRENTVVETEPGVIPANLDSSMSQRSVSYNARPAFNQLAGFGQSSLSDCSVKYMEQQILSGVGRRSHVNPTMNPSSTVNMSQLKTDGGQIFEQSQSSVSTSLIGGIPIHSRMGNLLRTNMINCSVSNLPKVSNADFSGTQKVGFGLQNDNSTEAGTYSLPNLTSQSFSSHMHLEGLDQKNLPIDLKHGFNALASTDQNIDDDLLQALKIPSLHLEEHVPMSDRIPGFVQDCFNKDGSSQHMMKVNAKQEETCIQLPSGDDLFDVLGVDFKRKLLNGNWNKLFADESDANTEILDKKATCMNLQGIIGHENSFSANEAISDSSIFSGMGTDHLLDAVVSRAQSAAKLNSDEMSCRTTVTRINPTCVPSPACKQVMSDHGVQGGLFDFPKTGVKTGAVETSSLRCSKDDTGNCSQTTSIYGSQLSSWVENGSNVKRENSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGSKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEARNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGGASSSNAVDSNMMIYHSFPQATQIPATGRPSSLQ 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi56g00007 821 CDD bHLH_AtLHW_like 612 681 - -
Gabi56g00007 821 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 36 IPR025610 -
Gabi56g00007 821 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 608 657 IPR011598 GO:0046983
Gabi56g00007 821 MobiDBLite consensus disorder prediction 582 623 - -
Gabi56g00007 821 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 815 IPR043561 GO:0003700|GO:0006355
Gabi56g00007 821 MobiDBLite consensus disorder prediction 598 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi56g00007 Gabi-Chr56 98142 103180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi56g00007 410 815 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.285 1.43e-121 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi56g00007 - - aprc:113857443 1263.83