Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi569g00004 ATGAGCTTGCAAATTCGAAGAGAACGGAAGGATTGGTCAAGGGCTCGATCACAAGCTCCTGTTCGTCAGGAATGGGTTCCTAGAGGTGCATCCAGCACTGTTGTCCAGCCATCAAATTTGAACTCACATCAAAATGCTAATGCTGATGCTGATTCTGGTTGCTCCAATCATGGTTTTGCTGTTGCTCCACCCGTGACTCGGCATAGAAGCAATGATGGTAATCATAGGATGGAAAAGGAAAAGGAAAAGGAAAAGGAAAGGGATAAAGGGAGAAGTGGGAATCAGGTGGTGAGGGGATTAGGATTAGGATTGAGAGACTCAAGTTTGCCTCAGTTGGTGCAAGAGATTCAGGAGAAGCTCATAAAAGGCACCGTGGAGTGCATGATTTGCTATGACATGGTCCGTAGGTCGGCGCCTGTTTGGTCTTGCTCAAGTTGCTACTCTATCTTTCATCTGAGTTGCATCAAGAAGTGGGCTAGGGCACCCACCTCAGTTGATTTGTCTGCGGAGAAGAATCAAGGGTTTAATTGGCGGTGTCCCGGTTGTCAGTCTGTGAAGCTCATGTCTTGGAAGGAGATTAGGTATATTTGCTTTTGTGGGAAAAGGCCAGACCCTCCATCTGATTTGTATCTGACACCACATTCGTGTGGAGAACCATGTGGGAAGCCTCTTGAGAGGGAGTTGTTGGTTAGTGGAATGAGCAAGGATGATCTTTGCCCTCATGTTTGTGTCTTGCAATGTCATCCGGGTCCATGCCCTCCCTGTAAAGCATTTGCCCCTCAACGTTTGTGCCCTTGTGGGAAGAAAACAATTACCACCCGTTGCTCTGATCGGCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGATAAGCTTCTTGAATGTGGGCGTCACCGCTGTGAAAACGTTTGTCATGTGGGTCCTTGTGATCCTTGCCAGGTTCTAATAAACGCCTCTTGCTTTTGCAGTAAAATGATGGAGGTTATTCTTTGTGGGGACATGTCTGTGAAGGGTGAATTCAATGTAGATGATGGAGTTTTTTCTTGTGGTTCCAATTGTGGAAAGAAACTTAGTTGTGGGAATCATATCTGCAGTGAGATTTGTCATCCAGGCAGCTGTGGGGAGTGTGAACTTTTACCAAGCCGGGTTAAGACTTGCCCTTGTGGGAGAACAAGGTTGGAGGATGAACGCCAGAGTTGCTTGGATGCTATACCTACCTGCTCTCAAGTATGTGGCAAGCTCCTTCCTTGTGGGATGCATAATTGTATAGAAACATGTCATGTTGGGGAATGTCCACCTTGTTTGGTTCTAGTTTCACAGAAGTGTCGTTGTGGCTCAACTTCTCGAACTGTGGAGTGCTATAAGACAATAATGGAGAATGAGAAATTTACTTGTGCAAAGCCTTGTGGGCAGAAAAAGAACTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCTCTTTCTAATCCAAATAATAATTTAAGTGGGGATTGGGATCCTCACTTTTGTTCCATGTCATGCGGAAAGAAGCTTAGATGTGGTCAGCATGTGTGTGAATCACTGTGTCACAGTGGTTATTGCCCACCTTGTCTTGAAACAATCTTTACCGATTTGACTTGTGCTTGTGGTAGGACTTCAATCCCTCCTCCTCTACCTTGTGGTACACTGCCTCCCTCGTGTCAGCTTCCATGTTCAGTTCCTCAACCATGTGGCCATTCAGGCTCACACAGTTGCCATTTTGGAGACTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGCGTTGGTGGGCATGCTGTTCTTAGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAATCTCTGTGGCAAGACCAGACAGTGTGGTTTACATGCATGCGGCAGAACATGTCATCCCCCACCTTGTGATAATACATCTGGTTGTGTGCAAGGTTTCCAAGCACCATGTGGCCAAACATGTGGTGCTCCAAGGCGAGACTGCCGGCATACGTGTAAGGCTCCATGTCACCCTTCATCTCCATGCCCGGATATAAGATGCGAATTCCCTGTTACAATTACTTGTTCTTGTGGCCGTATAACAGCAAATGTTCCTTGTGATGCTGGTGGTGGTAGTAGTAGTAACTATAATGCTGATGCCATACATGAAGCTTCTATTATTCAAAAGTTGCCTGTTCCACTTCAACCGGTTGATGCAAATGGCATAAAAATTCCCCTTGGAAAAAGAAAGCTGATGTGTGATGATGAATGCGCTAAGTTGGAGCGTAAAAGAGTTCTTGCTGATGCTTTTGACATTAGTGCTTCAAGTCTGGATTCTCTCCATTTTGGTGAAAACTCTCTTTCTTCTGAATTGCTTTCTGACTTGTTCAGACGTGATCCGAAGTGGGTTTTAGCTGTTGAGGAGAGATGCAAATTTTTAGTACTTGGCAAGAGCAGAGGAACTGCACGTAGTTTAAAAGTCCATGTTTTTTGTCCTATGCTGAAGGATAAAAGAGATGCAGTGAGGTTGATTGCTGAAAGATGGAAACTTGCAGTGAATGCTGCTGGTTGGGAGCCTAGGCGATTTATCGTAGTTTCTGTTACCCAAAAATCAAAGGCCCCAGCTCGTGTGTTAGGGGCTAAGGGTACCACAACTTCAAGTACTCCTCTTCCTCCTGCATTTGATCCTTTGGTAGATATGGACCCGCGGCTTGTTGTCTCATTTCTAGATTTGCCAAGGGAAGCTGATATCAGTGCCTTGGTGTTGAGATTTGGTGGTGAGTGTGAGCTTGTTTGGTTGAATGACAAGAATGCTTTAGCTGTTTTCCATGATCCTGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGATCAGTTTATCAGGGAGCTGTTTCGGTTGCAGCATCTTCAGCTACCAATGCCTGGGGAGGAGCTGGGACAATGAAAGAAGGAGGAGCACTGTCAGCATTGAAAGGTAATCCATGGAGAAAAGCTGTAGTACAAGAGTCTAGTTGGAGAGAAGATTCTTGGGGTGATGAAGATTGGTCTACTGGTTCTGCTAATATCCAGCCATCTGTTTGGAAGAAAGAAGCTCCACTAACTGCTTTGTTAAATCGTTGGAATGTCTTAGACCAGGAATCGAGCACAAGTTCATCGTTTACAACTGTTGGAACTGAAGTTTCTGGGAAAAATACTGAAAGTAGTGTTGTCTCAAGGTTGGAGTCTCACGCAGGTGGGTCAAATGAAGAAGGGCAACTTGGAGGAAACTCAGATGTAGCTGAAGTTTCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 3306 0.4543 MSLQIRRERKDWSRARSQAPVRQEWVPRGASSTVVQPSNLNSHQNANADADSGCSNHGFAVAPPVTRHRSNDGNHRMEKEKEKEKERDKGRSGNQVVRGLGLGLRDSSLPQLVQEIQEKLIKGTVECMICYDMVRRSAPVWSCSSCYSIFHLSCIKKWARAPTSVDLSAEKNQGFNWRCPGCQSVKLMSWKEIRYICFCGKRPDPPSDLYLTPHSCGEPCGKPLERELLVSGMSKDDLCPHVCVLQCHPGPCPPCKAFAPQRLCPCGKKTITTRCSDRQSVLTCGQRCDKLLECGRHRCENVCHVGPCDPCQVLINASCFCSKMMEVILCGDMSVKGEFNVDDGVFSCGSNCGKKLSCGNHICSEICHPGSCGECELLPSRVKTCPCGRTRLEDERQSCLDAIPTCSQVCGKLLPCGMHNCIETCHVGECPPCLVLVSQKCRCGSTSRTVECYKTIMENEKFTCAKPCGQKKNCGRHRCSERCCPLSNPNNNLSGDWDPHFCSMSCGKKLRCGQHVCESLCHSGYCPPCLETIFTDLTCACGRTSIPPPLPCGTLPPSCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVAKECVGGHAVLRNIPCGSKDIRCNNLCGKTRQCGLHACGRTCHPPPCDNTSGCVQGFQAPCGQTCGAPRRDCRHTCKAPCHPSSPCPDIRCEFPVTITCSCGRITANVPCDAGGGSSSNYNADAIHEASIIQKLPVPLQPVDANGIKIPLGKRKLMCDDECAKLERKRVLADAFDISASSLDSLHFGENSLSSELLSDLFRRDPKWVLAVEERCKFLVLGKSRGTARSLKVHVFCPMLKDKRDAVRLIAERWKLAVNAAGWEPRRFIVVSVTQKSKAPARVLGAKGTTTSSTPLPPAFDPLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGSVYQGAVSVAASSATNAWGGAGTMKEGGALSALKGNPWRKAVVQESSWREDSWGDEDWSTGSANIQPSVWKKEAPLTALLNRWNVLDQESSTSSSFTTVGTEVSGKNTESSVVSRLESHAGGSNEEGQLGGNSDVAEVSEVVDDWEKAYE 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi569g00004 1101 CDD NF-X1-zinc-finger 284 332 - -
Gabi569g00004 1101 MobiDBLite consensus disorder prediction 1 17 - -
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 241 256 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 622 637 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 512 529 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 474 485 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 416 433 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 294 312 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 654 679 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 569 586 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 Pfam NF-X1 type zinc finger 358 375 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 CDD RING-CH-C4HC3_NFX1-like 126 183 - -
Gabi569g00004 1101 ProSiteProfiles Zinc finger PHD-type profile. 124 185 IPR019787 -
Gabi569g00004 1101 CDD NF-X1-zinc-finger 216 277 - -
Gabi569g00004 1101 MobiDBLite consensus disorder prediction 29 52 - -
Gabi569g00004 1101 SUPERFAMILY RING/U-box 116 186 - -
Gabi569g00004 1101 MobiDBLite consensus disorder prediction 1042 1101 - -
Gabi569g00004 1101 MobiDBLite consensus disorder prediction 1042 1069 - -
Gabi569g00004 1101 MobiDBLite consensus disorder prediction 1 97 - -
Gabi569g00004 1101 CDD NF-X1-zinc-finger 502 554 - -
Gabi569g00004 1101 CDD NF-X1-zinc-finger 650 699 - -
Gabi569g00004 1101 CDD NF-X1-zinc-finger 406 454 - -
Gabi569g00004 1101 CDD NF-X1-zinc-finger 559 607 - -
Gabi569g00004 1101 CDD NF-X1-zinc-finger 348 393 - -
Gabi569g00004 1101 MobiDBLite consensus disorder prediction 69 93 - -
Gabi569g00004 1101 ProSiteProfiles Zinc finger RING-type profile. 127 183 IPR001841 -
Gabi569g00004 1101 SMART znfxneu3 622 644 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 SMART znfxneu3 661 682 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 SMART znfxneu3 358 377 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 SMART znfxneu3 416 435 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 SMART znfxneu3 474 504 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 SMART znfxneu3 569 587 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 SMART znfxneu3 239 257 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 SMART znfxneu3 512 531 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 SMART znfxneu3 294 313 IPR000967 GO:0005634|GO:0008270
Gabi569g00004 1101 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 44 1007 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi569g00004 Gabi-Chr569 83517 87769 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Gabi569g00004 zf-NF-X1 14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi569g00004 K12236 - qsa:O6P43_005222 1761.12