Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi569g00001 ATGGCACTCGTCCGCAACCGCCGTCACCCCAACCTCCGCCTCCCCATCCCCGAACCCTTAGAGCACCGTCCCTGTGTCATCCTCCCCATCCCCTCCACCACCTCCGAAACCTCCTCCGCCGTGGCCGTTGCCGACAGCGACCTAGAGAAGCTTGCCGTCCTCGGAAGCGGTTCCTCCGGCACCGTCTACAAGGTCCGCCACAAGAAGACCTACAAGATCTACGCCCTCAAGGTCATCCATTATGAATCTGAAGCCGCCGCACGCCGCCGCATCCTCGCCGAGATAAACATCCTCGCCGCCGCTGACTGCCCCTACATTGTCCGGTACCATGGCTCTTCCGAGCAACCCTCCGGCGATATCTCGATCGTAATGGAATACATGGACTCAGGCACGCTCGAAACCGCCCTCAAATCCGACGGCGCATTCTCCGAACGGCGACTCTCTGCCGTGGCACGTGACGTTCTCAACGGCATGGCGTGTATCCACGCGCGCAACGTGGCTCACCGTGATTTAAAACCCGCAAATCTTCTGGTGAATTCAAACAACGAGATCAAGATTGCGGATTTTGGAGTCAGCAAACACGTGTCAGCCTGCACCTGCAACACTTATGTGGGCACGTGCGCGTACATGAGTCCCGAACGGTTTAACCCGAATGGTGATGAGGGGAACTATAACGGTTTTGCTGCTGATATATGGAGCTTCGGTTTGACGCTGTTTGAACTCTATGTGGGTCACTACCCTTTTCTTCAGCCGGGTCAGACACCCACCTGGACCAACCTCATGTGCGCGATTTGCTTTGGCGACCCGCCATCCCTGCCGGAGACCGCATCGCCGGAGTTTCGCAGCTTTATGGAGTGTTGCCTCAAGAAAGAGTCCGGTGAAAGGTGGACGGCGGCTCAGCTCTTGACCCACCCATTTGTGTATAAAGATCCGGAAACTTGTTAA 945 0.5683 MALVRNRRHPNLRLPIPEPLEHRPCVILPIPSTTSETSSAVAVADSDLEKLAVLGSGSSGTVYKVRHKKTYKIYALKVIHYESEAAARRRILAEINILAAADCPYIVRYHGSSEQPSGDISIVMEYMDSGTLETALKSDGAFSERRLSAVARDVLNGMACIHARNVAHRDLKPANLLVNSNNEIKIADFGVSKHVSACTCNTYVGTCAYMSPERFNPNGDEGNYNGFAADIWSFGLTLFELYVGHYPFLQPGQTPTWTNLMCAICFGDPPSLPETASPEFRSFMECCLKKESGERWTAAQLLTHPFVYKDPETC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi569g00001 314 FunFam Dual specificity mitogen-activated protein kinase kinase 32 127 - -
Gabi569g00001 314 Gene3D Transferase(Phosphotransferase) domain 1 124 313 - -
Gabi569g00001 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Gabi569g00001 314 PIRSF ILK 26 304 - -
Gabi569g00001 314 CDD PKc_MAPKK_plant_like 46 309 - -
Gabi569g00001 314 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Gabi569g00001 314 ProSiteProfiles Protein kinase domain profile. 48 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi569g00001 314 SMART serkin_6 48 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi569g00001 314 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 34 309 - -
Gabi569g00001 314 Pfam Protein kinase domain 49 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi569g00001 314 Gene3D Phosphorylase Kinase; domain 1 29 123 - -
Gabi569g00001 314 SUPERFAMILY Protein kinase-like (PK-like) 46 309 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi569g00001 Gabi-Chr569 7939 8883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi569g00001 1 310 MAP Kinase Kinase Gene Family AT1G73500 52.716 1.43e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi569g00001 Pkinase 7.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi569g00001 K20604 - gmx:100804100 447.973