Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi565g00027 ATGTTTCCATTGGCTACAAATCAGCAATTTAGTGCACTCCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGTACCAAATATTCAGGCTACACGACATGCTAGGCGGGTTTATGTAGGGGGCCTCCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCCAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCAGTGGTAAACGTTTACATCAACCATGATAAGAAATTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGACTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTCCGGAGACCTACTGATTATAATCCTTCTCTAGCTGCCACCCTAGGTCCAAGCCAACCTAATCCAAACCTTAATCTGGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTTCCTTATTACTTTACCGAAACACAGATCAGAGAGCTTTTAGAGACCTTTGGTCCTCTTCAAGGTTTTGATCTAGTTAAAGATAGAGAAACAGGAAACTCAAAGGGTTACGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTCATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGTCTATGAAGAGATTCTTGATGATATGAGAAAGGAGTGCTCCAGATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTCCACAACCAGATGGTGAACAGTCCGCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTCGATGGTGCTACAAAAGCACGTGCTGGATTGAATGGTCGTAAATTTGATGGAAATCAAGTAGTGGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGTGATTATGAAGGCTAG 1116 0.4453 MFPLATNQQFSALPVMPVQAMTQQVPNIQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMTLDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLQGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESIFMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEVYEEILDDMRKECSRFGTLVNVVIPRPQPDGEQSAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi565g00027 371 FunFam U2 snRNP auxiliary factor large subunit 30 131 - -
Gabi565g00027 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 118 IPR000504 GO:0003723
Gabi565g00027 371 CDD RRM1_U2AF65 34 116 - -
Gabi565g00027 371 Gene3D - 265 370 IPR012677 -
Gabi565g00027 371 Gene3D - 30 131 IPR012677 -
Gabi565g00027 371 SUPERFAMILY RNA-binding domain, RBD 151 240 IPR035979 GO:0003676
Gabi565g00027 371 FunFam U2 snRNP auxiliary factor large subunit 265 370 - -
Gabi565g00027 371 SMART rrm1_1 156 229 IPR000504 GO:0003723
Gabi565g00027 371 SMART rrm1_1 36 114 IPR000504 GO:0003723
Gabi565g00027 371 SMART rrm1_1 271 358 IPR000504 GO:0003723
Gabi565g00027 371 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 2 369 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi565g00027 371 CDD RRM2_U2AF65 155 231 - -
Gabi565g00027 371 SUPERFAMILY RNA-binding domain, RBD 24 121 IPR035979 GO:0003676
Gabi565g00027 371 CDD RRM3_U2AF65 269 357 - -
Gabi565g00027 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 362 IPR000504 GO:0003723
Gabi565g00027 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 233 IPR000504 GO:0003723
Gabi565g00027 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 354 IPR000504 GO:0003723
Gabi565g00027 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 226 IPR000504 GO:0003723
Gabi565g00027 371 SUPERFAMILY RNA-binding domain, RBD 266 364 IPR035979 GO:0003676
Gabi565g00027 371 Gene3D - 146 247 IPR012677 -
Gabi565g00027 371 PANTHER RNA-BINDING PROTEIN 4 369 - -
Gabi565g00027 371 FunFam U2 snRNP auxiliary factor large subunit 132 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi565g00027 Gabi-Chr565 137014 142258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi565g00027 153 350 Eukaryotic Initiation Factors Gene Family AT1G49760 26.633 6.66e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi565g00027 K12837 - gmx:100793801 703.745