Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi565g00026 ATGTTTCCATTGGCTACAAATCAGATGCAGCAATTTAGTGCACTCCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGCTACACGACATGCTAGGCGGGTTTATGTAGGGGGCCTCCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCCAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCAGTGGTAAACGTTTACATCAACCATGATAAGAAATTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGACTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTCCGGAGACCTACTGATTATAATCCTTCTCTAGCTGCCACCCTAGGTCCAAGCCAACCTAATCCAAACCTTAATCTGGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTTCCTTATTACTTTACCGAAACACAGATCAGAGAGCTTTTAGAGACCTTTGGTCCTCTTCAAGGTTTTGATCTAGTTAAAGATAGAGAAACAGGAAACTCAAAGGGTTACGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTCATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGTCTATGAAGAGATTCTTGATGATATGAGAAAGGAGTGCTCCAGATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTCCACAACCAGATGGTGAACAGTCCGCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTCGATGGTGCTACAAAAGCACGTGCTGGATTGAATGGTCGTAAATTTGATGGAAATCAAGTAGTGGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGTGATTATGAAGGCTAG 1107 0.4472 MFPLATNQMQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMTLDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLQGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESIFMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEVYEEILDDMRKECSRFGTLVNVVIPRPQPDGEQSAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi565g00026 368 SUPERFAMILY RNA-binding domain, RBD 14 118 IPR035979 GO:0003676
Gabi565g00026 368 CDD RRM2_U2AF65 152 228 - -
Gabi565g00026 368 PANTHER RNA-BINDING PROTEIN 3 366 - -
Gabi565g00026 368 FunFam U2 snRNP auxiliary factor large subunit 129 244 - -
Gabi565g00026 368 FunFam U2 snRNP auxiliary factor large subunit 262 367 - -
Gabi565g00026 368 Gene3D - 27 128 IPR012677 -
Gabi565g00026 368 FunFam U2 snRNP auxiliary factor large subunit 27 128 - -
Gabi565g00026 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 359 IPR000504 GO:0003723
Gabi565g00026 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 230 IPR000504 GO:0003723
Gabi565g00026 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 351 IPR000504 GO:0003723
Gabi565g00026 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 223 IPR000504 GO:0003723
Gabi565g00026 368 Gene3D - 262 367 IPR012677 -
Gabi565g00026 368 CDD RRM3_U2AF65 266 354 - -
Gabi565g00026 368 Gene3D - 143 244 IPR012677 -
Gabi565g00026 368 SUPERFAMILY RNA-binding domain, RBD 149 237 IPR035979 GO:0003676
Gabi565g00026 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 115 IPR000504 GO:0003723
Gabi565g00026 368 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 7 366 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi565g00026 368 SMART rrm1_1 268 355 IPR000504 GO:0003723
Gabi565g00026 368 SMART rrm1_1 153 226 IPR000504 GO:0003723
Gabi565g00026 368 SMART rrm1_1 33 111 IPR000504 GO:0003723
Gabi565g00026 368 SUPERFAMILY RNA-binding domain, RBD 263 361 IPR035979 GO:0003676
Gabi565g00026 368 CDD RRM1_U2AF65 31 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi565g00026 Gabi-Chr565 137014 142258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi565g00026 150 347 Eukaryotic Initiation Factors Gene Family AT1G49760 26.633 6.00e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi565g00026 K12837 - gmx:100793801 718.768