Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi565g00025 ATGTTTCCATTGGCTACAAATCAGATGCAGCAATTTAGTGCACTCCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGTACCAAATATTCAGGCTACACGACATGCTAGGCGGGTTTATGTAGGGGGCCTCCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCCAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCAGTGGTAAACGTTTACATCAACCATGATAAGAAATTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGACTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTCCGGAGACCTACTGATTATAATCCTTCTCTAGCTGCCACCCTAGGTCCAAGCCAACCTAATCCAAACCTTAATCTGGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTTCCTTATTACTTTACCGAAACACAGATCAGAGAGCTTTTAGAGACCTTTGGTCCTCTTCAAGGTTTTGATCTAGTTAAAGATAGAGAAACAGGAAACTCAAAGGGTTACGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTCATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGTCTATGAAGAGATTCTTGATGATATGAGAAAGGAGTGCTCCAGATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTCCACAACCAGATGGTGAACAGTCCGCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTCGATGGTGCTACAAAAGCACGTGCTGGATTGAATGGTCGTAAATTTGATGGAAATCAAGTAGTGGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGTGATTATGAAGGCTAG 1122 0.4456 MFPLATNQMQQFSALPVMPVQAMTQQVPNIQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMTLDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLQGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESIFMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEVYEEILDDMRKECSRFGTLVNVVIPRPQPDGEQSAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi565g00025 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 228 IPR000504 GO:0003723
Gabi565g00025 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 356 IPR000504 GO:0003723
Gabi565g00025 373 SMART rrm1_1 38 116 IPR000504 GO:0003723
Gabi565g00025 373 SMART rrm1_1 158 231 IPR000504 GO:0003723
Gabi565g00025 373 SMART rrm1_1 273 360 IPR000504 GO:0003723
Gabi565g00025 373 FunFam U2 snRNP auxiliary factor large subunit 32 133 - -
Gabi565g00025 373 PANTHER RNA-BINDING PROTEIN 3 371 - -
Gabi565g00025 373 CDD RRM2_U2AF65 157 233 - -
Gabi565g00025 373 CDD RRM3_U2AF65 271 359 - -
Gabi565g00025 373 FunFam U2 snRNP auxiliary factor large subunit 134 249 - -
Gabi565g00025 373 SUPERFAMILY RNA-binding domain, RBD 24 123 IPR035979 GO:0003676
Gabi565g00025 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 364 IPR000504 GO:0003723
Gabi565g00025 373 SUPERFAMILY RNA-binding domain, RBD 154 242 IPR035979 GO:0003676
Gabi565g00025 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 235 IPR000504 GO:0003723
Gabi565g00025 373 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 14 371 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi565g00025 373 Gene3D - 267 372 IPR012677 -
Gabi565g00025 373 Gene3D - 148 249 IPR012677 -
Gabi565g00025 373 CDD RRM1_U2AF65 36 118 - -
Gabi565g00025 373 FunFam U2 snRNP auxiliary factor large subunit 267 372 - -
Gabi565g00025 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 120 IPR000504 GO:0003723
Gabi565g00025 373 Gene3D - 32 133 IPR012677 -
Gabi565g00025 373 SUPERFAMILY RNA-binding domain, RBD 268 366 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi565g00025 Gabi-Chr565 137014 142258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi565g00025 155 352 Eukaryotic Initiation Factors Gene Family AT1G49760 26.633 5.36e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi565g00025 K12837 - gmx:100793801 712.605