Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi565g00018 ATGGCTGAATACGAAGAGAGATATGAAGGGAACGGAGAAGAAGAAGAGCTTCACAATTCTCATGGTCATGCTCATGCTGATTCTTCTCCTCAACTTGGTGACACTACCCACCTCGATCTCACCGATTCCAAATCTCGCCATGGATCTCGTGATTATGACAGAGAATCTTCCAGAATCAGAGAGAAGGAGCGAGAGAAGGGGAGAGACAGGGACAGAGATAGGGAGAGAAGCAAAGATAGGGAACGAGATCGTGATGGGGAGAAGGAAAGGGACCGGGACAGGGATCACCATCATAGAGATAGACACAGGGACCGTAGTGAGAGAAGGGAAAGGGGGAGGGATAGAGATGATGATGATGATTATTACGGAAGTCGGGACTTTGATAGACGAAGGGATTATGATAGAGGGGATAGGCATAAGCGCAGGTCTAGGTCTCGATCTAGTTCACGTACAAGGGCTCGATCTGAGCATAGATCAAGGTCACGTTCTCGTTCACGCTCAAAGAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCTGCAATGTTGGCTGGTGCTTCTGCTGTTGCAGGCCAGATCACTGGGGCAAATCCTGCAATTCCGGGAATTTTTCAAAATATGTTTCCATTGATGCAGCAATTTAGTGCACTCCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGCTACACGACATGCTAGGCGGGTTTATGTAGGGGGCCTCCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCCAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCAGTGGTAAACGTTTACATCAACCATGATAAGAAATTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGACTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTCCGGAGACCTACTGATTATAATCCTTCTCTAGCTGCCACCCTAGGTCCAAGCCAACCTAATCCAAACCTTAATCTGGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTTCCTTATTACTTTACCGAAACACAGATCAGAGAGCTTTTAGAGACCTTTGGTCCTCTTCAAGGTTTTGATCTAGTTAAAGATAGAGAAACAGGAAACTCAAAGGGTTACGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTCATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGTCTATGAAGAGATTCTTGATGATATGAGAAAGGAGTGCTCCAGATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTCCACAACCAGATGGTGAACAGTCCGCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTCGATGGTGCTACAAAAGCACGTGCTGGATTGAATGGTCGTAAATTTGATGGAAATCAAGTAGTGGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGTGATTATGAAGGCTAG 1719 0.4607 MAEYEERYEGNGEEEELHNSHGHAHADSSPQLGDTTHLDLTDSKSRHGSRDYDRESSRIREKEREKGRDRDRDRERSKDRERDRDGEKERDRDRDHHHRDRHRDRSERRERGRDRDDDDDYYGSRDFDRRRDYDRGDRHKRRSRSRSSSRTRARSEHRSRSRSRSRSKSKRTSGFDMAPPASAMLAGASAVAGQITGANPAIPGIFQNMFPLMQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMTLDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLQGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESIFMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEVYEEILDDMRKECSRFGTLVNVVIPRPQPDGEQSAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi565g00018 572 Gene3D - 466 571 IPR012677 -
Gabi565g00018 572 Gene3D - 347 448 IPR012677 -
Gabi565g00018 572 MobiDBLite consensus disorder prediction 1 180 - -
Gabi565g00018 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 434 IPR000504 GO:0003723
Gabi565g00018 572 CDD RRM1_U2AF65 235 317 - -
Gabi565g00018 572 Gene3D - 231 332 IPR012677 -
Gabi565g00018 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 495 555 IPR000504 GO:0003723
Gabi565g00018 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 427 IPR000504 GO:0003723
Gabi565g00018 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 312 IPR000504 GO:0003723
Gabi565g00018 572 FunFam U2 snRNP auxiliary factor large subunit 466 571 - -
Gabi565g00018 572 CDD RRM2_U2AF65 356 432 - -
Gabi565g00018 572 FunFam U2 snRNP auxiliary factor large subunit 231 332 - -
Gabi565g00018 572 CDD RRM3_U2AF65 470 558 - -
Gabi565g00018 572 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 60 570 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi565g00018 572 SUPERFAMILY RNA-binding domain, RBD 467 565 IPR035979 GO:0003676
Gabi565g00018 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 319 IPR000504 GO:0003723
Gabi565g00018 572 FunFam U2 snRNP auxiliary factor large subunit 333 448 - -
Gabi565g00018 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 477 563 IPR000504 GO:0003723
Gabi565g00018 572 MobiDBLite consensus disorder prediction 39 139 - -
Gabi565g00018 572 SUPERFAMILY RNA-binding domain, RBD 213 322 IPR035979 GO:0003676
Gabi565g00018 572 PANTHER RNA-BINDING PROTEIN 28 570 - -
Gabi565g00018 572 SMART rrm1_1 237 315 IPR000504 GO:0003723
Gabi565g00018 572 SMART rrm1_1 472 559 IPR000504 GO:0003723
Gabi565g00018 572 SMART rrm1_1 357 430 IPR000504 GO:0003723
Gabi565g00018 572 SUPERFAMILY RNA-binding domain, RBD 353 441 IPR035979 GO:0003676
Gabi565g00018 572 MobiDBLite consensus disorder prediction 1 23 - -
Gabi565g00018 572 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi565g00018 Gabi-Chr565 134387 142258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi565g00018 354 551 Eukaryotic Initiation Factors Gene Family AT1G49760 26.633 8.75e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi565g00018 K12837 - gmx:100793801 781.941