Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi565g00017 ATGGCTGAATACGAAGAGAGATATGAAGGGAACGGAGAAGAAGAAGAGCTTCACAATTCTCATGGTCATGCTCATGCTGATTCTTCTCCTCAACTTGGTGACACTACCCACCTCGATCTCACCGATTCCAAATCTCGCCATGGATCTCGTGATTATGACAGAGAATCTTCCAGAATCAGAGAGAAGGAGCGAGAGAAGGGGAGAGAAAAGGAGAGAAAAAGAGAAAAGGGGAGGGACAGGGATAGGGAGAGAAATCGTGATGGGGAGAAGGAAAGGGACCGGGACAGGGATCACCATCATAGAGATAGACACAGGGACCGTAGTGAGAGAAGGGAAAGGGGGAGGGATAGAGATGATGATGATGATTATTACGGAAGTCGGGACTTTGATAGACGAAGGGATTATGATAGAGGGGATAGGCATAAGCGCAGGTCTAGGTCTCGATCTAGTTCACGTACAAGGGCTCGATCTGAGCATAGATCAAGGTCACGTTCTCGTTCACGCTCAAAGAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCTGCAATGTTGGCTGGTGCTTCTGCTGTTGCAGGCCAGATCACTGGGGCAAATCCTGCAATTCCGGGAATTTTTCAAAATATGTTTCCATTGATGCAGCAATTTAGTGCACTCCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGCTACACGACATGCTAGGCGGGTTTATGTAGGGGGCCTCCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCCAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCAGTGGTAAACGTTTACATCAACCATGATAAGAAATTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGACTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTCCGGAGACCTACTGATTATAATCCTTCTCTAGCTGCCACCCTAGGTCCAAGCCAACCTAATCCAAACCTTAATCTGGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTTCCTTATTACTTTACCGAAACACAGATCAGAGAGCTTTTAGAGACCTTTGGTCCTCTTCAAGGTTTTGATCTAGTTAAAGATAGAGAAACAGGAAACTCAAAGGGTTACGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTCATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGTCTATGAAGAGATTCTTGATGATATGAGAAAGGAGTGCTCCAGATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTCCACAACCAGATGGTGAACAGTCCGCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTCGATGGTGCTACAAAAGCACGTGCTGGATTGAATGGTCGTAAATTTGATGGAAATCAAGTAGTGGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGTGATTATGAAGGCTAG 1725 0.4597 MAEYEERYEGNGEEEELHNSHGHAHADSSPQLGDTTHLDLTDSKSRHGSRDYDRESSRIREKEREKGREKERKREKGRDRDRERNRDGEKERDRDRDHHHRDRHRDRSERRERGRDRDDDDDYYGSRDFDRRRDYDRGDRHKRRSRSRSSSRTRARSEHRSRSRSRSRSKSKRTSGFDMAPPASAMLAGASAVAGQITGANPAIPGIFQNMFPLMQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMTLDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLQGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESIFMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEVYEEILDDMRKECSRFGTLVNVVIPRPQPDGEQSAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi565g00017 574 Gene3D - 468 573 IPR012677 -
Gabi565g00017 574 Gene3D - 349 450 IPR012677 -
Gabi565g00017 574 MobiDBLite consensus disorder prediction 1 182 - -
Gabi565g00017 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 321 IPR000504 GO:0003723
Gabi565g00017 574 FunFam U2 snRNP auxiliary factor large subunit 233 334 - -
Gabi565g00017 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 479 565 IPR000504 GO:0003723
Gabi565g00017 574 SMART rrm1_1 239 317 IPR000504 GO:0003723
Gabi565g00017 574 SMART rrm1_1 359 432 IPR000504 GO:0003723
Gabi565g00017 574 SMART rrm1_1 474 561 IPR000504 GO:0003723
Gabi565g00017 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 436 IPR000504 GO:0003723
Gabi565g00017 574 SUPERFAMILY RNA-binding domain, RBD 215 324 IPR035979 GO:0003676
Gabi565g00017 574 Coils Coil 52 72 - -
Gabi565g00017 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 314 IPR000504 GO:0003723
Gabi565g00017 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 429 IPR000504 GO:0003723
Gabi565g00017 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 497 557 IPR000504 GO:0003723
Gabi565g00017 574 Gene3D - 233 334 IPR012677 -
Gabi565g00017 574 SUPERFAMILY RNA-binding domain, RBD 469 567 IPR035979 GO:0003676
Gabi565g00017 574 CDD RRM1_U2AF65 237 319 - -
Gabi565g00017 574 PANTHER RNA-BINDING PROTEIN 42 572 - -
Gabi565g00017 574 SUPERFAMILY RNA-binding domain, RBD 355 443 IPR035979 GO:0003676
Gabi565g00017 574 CDD RRM2_U2AF65 358 434 - -
Gabi565g00017 574 MobiDBLite consensus disorder prediction 1 23 - -
Gabi565g00017 574 CDD RRM3_U2AF65 472 560 - -
Gabi565g00017 574 FunFam U2 snRNP auxiliary factor large subunit 468 573 - -
Gabi565g00017 574 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 60 572 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi565g00017 574 MobiDBLite consensus disorder prediction 39 141 - -
Gabi565g00017 574 MobiDBLite consensus disorder prediction 24 38 - -
Gabi565g00017 574 FunFam U2 snRNP auxiliary factor large subunit 335 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi565g00017 Gabi-Chr565 134387 142258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi565g00017 356 553 Eukaryotic Initiation Factors Gene Family AT1G49760 26.633 7.87e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi565g00017 K12837 - gmx:100793801 781.941