Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi565g00014 ATGTTTCAAAATATGTTTCCATTGGCTACAAATCAGCAATTTAGTGCACTCCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGTACCAAATATTCAGGCTACACGGCATGCTAGGCGGGTTTATGTAGGGGGCCTCCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCCAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAACGTTTACATCAACCATGATAAGAAATTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTCCGGAGACCTACTGATTATAATCCTTCTCTAGCTGCCACCCTAGGTCCAAGCCAACCTAATCCAAACCTTAATCTGGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTACCTTATTACTTTACCGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGAGGTTTTGATCTAGTTAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGACTACGAAGAGATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTTCCCAACCAGTTCCACAACCAGATGGTGAACAGTCTGCAGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCACGTGCTGGATTGAATGGTCGTAAATTTGGTGGAAATCAAGTAGTGGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGTGATTATGAAGGCTAG 1140 0.4447 MFQNMFPLATNQQFSALPVMPVQAMTQQVPNIQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGTLVNVVIPRSQPVPQPDGEQSAGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVVAVFYPENKFAQGDYEG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi565g00014 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 370 IPR000504 GO:0003723
Gabi565g00014 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 237 IPR000504 GO:0003723
Gabi565g00014 379 CDD RRM1_U2AF65 38 120 - -
Gabi565g00014 379 SMART rrm1_1 160 233 IPR000504 GO:0003723
Gabi565g00014 379 SMART rrm1_1 40 118 IPR000504 GO:0003723
Gabi565g00014 379 SMART rrm1_1 281 366 IPR000504 GO:0003723
Gabi565g00014 379 FunFam U2 snRNP auxiliary factor large subunit 136 251 - -
Gabi565g00014 379 FunFam U2 snRNP auxiliary factor large subunit 269 378 - -
Gabi565g00014 379 Gene3D - 150 251 IPR012677 -
Gabi565g00014 379 Gene3D - 34 135 IPR012677 -
Gabi565g00014 379 PANTHER RNA-BINDING PROTEIN 1 377 - -
Gabi565g00014 379 Gene3D - 269 378 IPR012677 -
Gabi565g00014 379 SUPERFAMILY RNA-binding domain, RBD 27 125 IPR035979 GO:0003676
Gabi565g00014 379 CDD RRM3_U2AF65 273 365 - -
Gabi565g00014 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 362 IPR000504 GO:0003723
Gabi565g00014 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 230 IPR000504 GO:0003723
Gabi565g00014 379 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 377 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi565g00014 379 CDD RRM2_U2AF65 159 235 - -
Gabi565g00014 379 SUPERFAMILY RNA-binding domain, RBD 160 370 IPR035979 GO:0003676
Gabi565g00014 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 122 IPR000504 GO:0003723
Gabi565g00014 379 FunFam U2 snRNP auxiliary factor large subunit 34 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi565g00014 Gabi-Chr565 106733 109902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi565g00014 161 358 Eukaryotic Initiation Factors Gene Family AT1G22760 25.628 4.78e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi565g00014 K12837 - gmx:100793801 712.22