Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi565g00013 ATGTTTCAAAATATGTTTCCATTGGCTACAAATCAGATGCAGCAATTTAGTGCACTCCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGCTACACGGCATGCTAGGCGGGTTTATGTAGGGGGCCTCCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCCAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAACGTTTACATCAACCATGATAAGAAATTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTCCGGAGACCTACTGATTATAATCCTTCTCTAGCTGCCACCCTAGGTCCAAGCCAACCTAATCCAAACCTTAATCTGGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTACCTTATTACTTTACCGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGAGGTTTTGATCTAGTTAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGACTACGAAGAGATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTTCCCAACCAGTTCCACAACCAGATGGTGAACAGTCTGCAGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCACGTGCTGGATTGAATGGTCGTAAATTTGGTGGAAATCAAGTAGTGGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGTGATTATGAAGGCTAG 1131 0.4465 MFQNMFPLATNQMQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGTLVNVVIPRSQPVPQPDGEQSAGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVVAVFYPENKFAQGDYEG 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi565g00013 376 CDD RRM2_U2AF65 156 232 - -
Gabi565g00013 376 Gene3D - 31 132 IPR012677 -
Gabi565g00013 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 367 IPR000504 GO:0003723
Gabi565g00013 376 SUPERFAMILY RNA-binding domain, RBD 17 122 IPR035979 GO:0003676
Gabi565g00013 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 119 IPR000504 GO:0003723
Gabi565g00013 376 Gene3D - 147 248 IPR012677 -
Gabi565g00013 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 234 IPR000504 GO:0003723
Gabi565g00013 376 FunFam U2 snRNP auxiliary factor large subunit 31 132 - -
Gabi565g00013 376 Gene3D - 266 375 IPR012677 -
Gabi565g00013 376 SMART rrm1_1 157 230 IPR000504 GO:0003723
Gabi565g00013 376 SMART rrm1_1 278 363 IPR000504 GO:0003723
Gabi565g00013 376 SMART rrm1_1 37 115 IPR000504 GO:0003723
Gabi565g00013 376 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 374 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi565g00013 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Gabi565g00013 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 359 IPR000504 GO:0003723
Gabi565g00013 376 FunFam U2 snRNP auxiliary factor large subunit 266 375 - -
Gabi565g00013 376 CDD RRM3_U2AF65 270 362 - -
Gabi565g00013 376 PANTHER RNA-BINDING PROTEIN 1 374 - -
Gabi565g00013 376 FunFam U2 snRNP auxiliary factor large subunit 133 248 - -
Gabi565g00013 376 SUPERFAMILY RNA-binding domain, RBD 157 367 IPR035979 GO:0003676
Gabi565g00013 376 CDD RRM1_U2AF65 35 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi565g00013 Gabi-Chr565 106733 109902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi565g00013 158 355 Eukaryotic Initiation Factors Gene Family AT1G22760 25.628 4.92e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi565g00013 K12837 - gmx:100793801 727.243