Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi565g00012 ATGTTTCAAAATATGTTTCCATTGGCTACAAATCAGATGCAGCAATTTAGTGCACTCCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGTACCAAATATTCAGGCTACACGGCATGCTAGGCGGGTTTATGTAGGGGGCCTCCCTCCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCCAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAACGTTTACATCAACCATGATAAGAAATTTGCCTTTGTCGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTCCGGAGACCTACTGATTATAATCCTTCTCTAGCTGCCACCCTAGGTCCAAGCCAACCTAATCCAAACCTTAATCTGGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTACCTTATTACTTTACCGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGAGGTTTTGATCTAGTTAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGACTACGAAGAGATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTTCCCAACCAGTTCCACAACCAGATGGTGAACAGTCTGCAGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCACGTGCTGGATTGAATGGTCGTAAATTTGGTGGAAATCAAGTAGTGGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGTGATTATGAAGGCTAG 1146 0.445 MFQNMFPLATNQMQQFSALPVMPVQAMTQQVPNIQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGTLVNVVIPRSQPVPQPDGEQSAGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVVAVFYPENKFAQGDYEG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi565g00012 381 Gene3D - 271 380 IPR012677 -
Gabi565g00012 381 FunFam U2 snRNP auxiliary factor large subunit 138 253 - -
Gabi565g00012 381 FunFam U2 snRNP auxiliary factor large subunit 271 380 - -
Gabi565g00012 381 CDD RRM3_U2AF65 275 367 - -
Gabi565g00012 381 SUPERFAMILY RNA-binding domain, RBD 162 372 IPR035979 GO:0003676
Gabi565g00012 381 CDD RRM2_U2AF65 161 237 - -
Gabi565g00012 381 Gene3D - 152 253 IPR012677 -
Gabi565g00012 381 FunFam U2 snRNP auxiliary factor large subunit 36 137 - -
Gabi565g00012 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 124 IPR000504 GO:0003723
Gabi565g00012 381 CDD RRM1_U2AF65 40 122 - -
Gabi565g00012 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 239 IPR000504 GO:0003723
Gabi565g00012 381 SMART rrm1_1 162 235 IPR000504 GO:0003723
Gabi565g00012 381 SMART rrm1_1 283 368 IPR000504 GO:0003723
Gabi565g00012 381 SMART rrm1_1 42 120 IPR000504 GO:0003723
Gabi565g00012 381 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 379 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi565g00012 381 PANTHER RNA-BINDING PROTEIN 1 379 - -
Gabi565g00012 381 SUPERFAMILY RNA-binding domain, RBD 27 127 IPR035979 GO:0003676
Gabi565g00012 381 Gene3D - 36 137 IPR012677 -
Gabi565g00012 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 232 IPR000504 GO:0003723
Gabi565g00012 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 364 IPR000504 GO:0003723
Gabi565g00012 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 372 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi565g00012 Gabi-Chr565 106733 109902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi565g00012 163 360 Eukaryotic Initiation Factors Gene Family AT1G22760 25.628 4.83e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi565g00012 K12837 - gmx:100793801 721.079