Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi563g00018 ATGGATGATTGTTGGGAGAATTTGTTCTCTGATTTGGATATGAACAATGATAACTCCTTCAACCAATGGCAAACAAATTCTTTTCTTAACTTTGAAGAGCATCTCACGCAGCAACCAAGCTTCTCTACTCAAACTCATTTGAAGGAAGTTTACAACTTGGAGCAACTGGGCCAATCTTGGCCTCATTTATCATCGAAAAGGACCCTAAACTTTGAATCCAGTGTGAGTCAAGGAACAAAGAGGGCTAGAAGCTCTTCGGAGACACATGATCACATAATGTCCGAGAGAAAAAGGAGACAAGAAATGGCAGAGAAATTCATAGCACTTTCATCTATTATTCCTGGCTTGAAGAAGATAGACAAGGCCACTGTACTTGGGGAAGCTATTAATTACGTGAAACAACTTCAAGAACGCATTGCAATGCTGGAGCAAGAAAGTAAGAAGAAAAGTTCCAACTCAATGATCTTTATTAAGAAATCTATATCTCATCCTAGCTGCTCTCATGATTACTGGGAACCCAATCAAGTGCTCCCTGAAGTCGAAGCAAGAGGCATAGAGTTAGAAAAGGAACTACTAATTAGAATCCATTGTGAGAAACGAAAGGGCATCTTGCTCAAACTATTGACCCTACTTAAAAATATACATCTCTCGATTGCTAGTAGCAGTGTACTTCCATTTGGAAAAAATACCCTCAACATTACCATTATTGCTCAGATGGGTAAGGAATACAACATGACAGAGGATGAATTGGTGAAAAACTTGAGAAAGGAGCTTTTGAAGTTATATGACATGTAA 795 0.3862 MDDCWENLFSDLDMNNDNSFNQWQTNSFLNFEEHLTQQPSFSTQTHLKEVYNLEQLGQSWPHLSSKRTLNFESSVSQGTKRARSSSETHDHIMSERKRRQEMAEKFIALSSIIPGLKKIDKATVLGEAINYVKQLQERIAMLEQESKKKSSNSMIFIKKSISHPSCSHDYWEPNQVLPEVEARGIELEKELLIRIHCEKRKGILLKLLTLLKNIHLSIASSSVLPFGKNTLNITIIAQMGKEYNMTEDELVKNLRKELLKLYDM 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi563g00018 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 135 IPR011598 GO:0046983
Gabi563g00018 264 Pfam Helix-loop-helix DNA-binding domain 91 136 IPR011598 GO:0046983
Gabi563g00018 264 PANTHER BHLH TRANSCRIPTION FACTOR 22 260 - -
Gabi563g00018 264 MobiDBLite consensus disorder prediction 71 97 - -
Gabi563g00018 264 Gene3D - 76 152 IPR036638 GO:0046983
Gabi563g00018 264 ProSiteProfiles ACT domain profile. 192 264 IPR002912 -
Gabi563g00018 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 149 IPR036638 GO:0046983
Gabi563g00018 264 MobiDBLite consensus disorder prediction 83 97 - -
Gabi563g00018 264 SMART finulus 92 141 IPR011598 GO:0046983
Gabi563g00018 264 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi563g00018 Gabi-Chr563 150975 153207 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi563g00018 43 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.865 4.09e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi563g00018 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi563g00018 - - cam:101501845 230.72