Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi563g00016 ATGGGTCATGATAATGATTTCCTAGAGCAGAGCCTCAGTGATGTGGAGGAGGAGTTCCTCAGAGAAATCCTGCAGCAACCGATTCTCTCTTCTGAAAGTGAAACTCGATCTTTTGTCCAGAATGACTTCACCGCCACATTTGCCGGTGCCCCCGCCGCCGCCGCCGCCGCCACAGACGGTAGCAGTTTATCCTCAAATGAGATCGGAGGAGGCTCCAATAGGCCTGTGAAAAGGCCTCGCCCATTGTCCTCTCCAAGAACATTCATTTTATCTTTCGATAACTCGACCATAATACCAGCTACCCCAGAATTGGTAAGCCTAGGAACATGTTCTTCTAAATCTAATTCCCCTTTGTCCTCCAAAAAACGGATCCTGGAAAATCAAAACATTGAACCAAAACCAAAGACCACACAAGGAGCGAAGAGGGGTAGGAGCGATTCTCAGACTCTGGATCACATCATGGCAGAGAGAAAAAGGAGGCAGGAACTAACAGAGAGGTTCATAGCACTTTCAGCAGTTATTCCTGGCTTGAAGAAGACGGACAAGACTAATATCCTTCGTGAAGCTATCAATTACGTTAAACAACTTCAAGAACGTGTAACGGAGCTAGAAGAGCGAAACATGAGAGGCAAAGAATCAATGATAATCCTCAAGAAGGCTGAAGTTTGTGCAAATGAAGATAACACTTCAAGTGAAACAAATTCCGAGGATTGCTGCAGGGGCAGCGAATTGCTACCTGATGTTGAAGCAAGAGTCTTGGAGAATGAGGTACTCATTGAGATCCATTGCGAGAAGGAAAATGGCATTGAGCTCAAACTCTTGGACCAGCTTGAAAATCTTAATCTATTTGTCACCGGCAGCAGCGTATTGCCGTTTGGGAATTCAACTCTTGGCATTACTATTATCGCTCAGATGGGTGACGCGTTTGGAATGAGGGCGAGTGATTTAGTGAAAAGCATAAAGCAAGTGCTTTCAAATCACATATCCAGCTATACAGATCCGTACTAG 1008 0.4524 MGHDNDFLEQSLSDVEEEFLREILQQPILSSESETRSFVQNDFTATFAGAPAAAAAATDGSSLSSNEIGGGSNRPVKRPRPLSSPRTFILSFDNSTIIPATPELVSLGTCSSKSNSPLSSKKRILENQNIEPKPKTTQGAKRGRSDSQTLDHIMAERKRRQELTERFIALSAVIPGLKKTDKTNILREAINYVKQLQERVTELEERNMRGKESMIILKKAEVCANEDNTSSETNSEDCCRGSELLPDVEARVLENEVLIEIHCEKENGIELKLLDQLENLNLFVTGSSVLPFGNSTLGITIIAQMGDAFGMRASDLVKSIKQVLSNHISSYTDPY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi563g00016 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Gabi563g00016 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 213 IPR036638 GO:0046983
Gabi563g00016 335 SMART finulus 153 202 IPR011598 GO:0046983
Gabi563g00016 335 MobiDBLite consensus disorder prediction 108 135 - -
Gabi563g00016 335 MobiDBLite consensus disorder prediction 57 82 - -
Gabi563g00016 335 Coils Coil 186 213 - -
Gabi563g00016 335 Pfam Helix-loop-helix DNA-binding domain 152 197 IPR011598 GO:0046983
Gabi563g00016 335 PANTHER BHLH TRANSCRIPTION FACTOR 32 326 - -
Gabi563g00016 335 MobiDBLite consensus disorder prediction 108 149 - -
Gabi563g00016 335 Gene3D - 139 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi563g00016 Gabi-Chr563 126617 129721 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi563g00016 115 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.395 3.72e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi563g00016 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi563g00016 - - aprc:113856039 393.66