Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi563g00012 ATGGAGTGGCCATGGCACAGCTTGTTCTCTGATGAGGAAATCGAAGATGGTGATTACTTCAACCATCGCCACAACAACCCAGTGGACGATGGAGAATCTGTTCTTCTGCAACACTCTGCTTTCTACTCTGAGATCCAAAGTGAGACAACCTTTGACGACCACACAGGATTCCTCAACAACGTCAAGAGTAGCAAACTTTTGACAAAGAGCGACATCTCCAACTCTATTGCGTCCCAAAATTCGAAGGAGAAATCTGCCACCTCCCCACCGTCCTATATTCTGTCTTTCTGTGACTCCACCGTGGTAGCAGCTACCCGCGACGGAGCTTACGGCGGAAAGCACCCCAACCGTGAGCAAACACGCAGTGGGCGCGTGAGTTCCTTAAAAGGGGCCAATCAAATAAAAATGAAGCCTAGAAAATCTTCGGAGTCTCTGGATCACATCATGGCAGAGAGAAAAAGGAGACAGGAACTGACCCAGAGATTCATAGCACTTTCAGCCATTATTCCTGGCTTGAAGAAGATTGACAAGGCCTCAATACTTAAGGAAACAGTCACTTATGTGAAACAACTTCAAAATCGAGTAAAAGAGTTGGAGGAACAAAGCTCCAAGAAGATCGTAGAGTCAATATCGTTCATCAATAAAGCCAATTTCTACATTGAGGAAGGGACTGCCTCTGATGATTCCCACAAATTCAATGTAGCACTCCCTGAACTCGAAGCAAGAGTCTTGGAAAAGGAAGTACTCATCCGAATCCACTGCGAGAAAAACAAAGGCGTTTTGCTCAAAATATTGACCCATATTAAAAATCTTGATCTCTCCATTGTAAGCACTAGTGTCTTACCATTTGGGAACTTCGCCCATGACGTTACCATTATTGCTCAGATGGGTGAGAAATACAACGTAACTGTGAAGGATCTAGTGAAAAGCCTCGGAGTGGCTCTCTTGGAGTCCACCTGA 960 0.451 MEWPWHSLFSDEEIEDGDYFNHRHNNPVDDGESVLLQHSAFYSEIQSETTFDDHTGFLNNVKSSKLLTKSDISNSIASQNSKEKSATSPPSYILSFCDSTVVAATRDGAYGGKHPNREQTRSGRVSSLKGANQIKMKPRKSSESLDHIMAERKRRQELTQRFIALSAIIPGLKKIDKASILKETVTYVKQLQNRVKELEEQSSKKIVESISFINKANFYIEEGTASDDSHKFNVALPELEARVLEKEVLIRIHCEKNKGVLLKILTHIKNLDLSIVSTSVLPFGNFAHDVTIIAQMGEKYNVTVKDLVKSLGVALLEST 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi563g00012 319 Coils Coil 181 208 - -
Gabi563g00012 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Gabi563g00012 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 205 IPR036638 GO:0046983
Gabi563g00012 319 Pfam Helix-loop-helix DNA-binding domain 147 192 IPR011598 GO:0046983
Gabi563g00012 319 Gene3D - 132 206 IPR036638 GO:0046983
Gabi563g00012 319 SMART finulus 148 197 IPR011598 GO:0046983
Gabi563g00012 319 PANTHER BHLH TRANSCRIPTION FACTOR 49 317 - -
Gabi563g00012 319 MobiDBLite consensus disorder prediction 108 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi563g00012 Gabi-Chr563 94090 96313 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi563g00012 126 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 37.946 6.09e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi563g00012 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi563g00012 - - lang:109357653 323.168