Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi563g00009 ATGATCTTCCCCCATGGGAAAGACAAGCGCGTAAGTTATGAGTTTCACAAGCCAATAGCCATCACTGAAATGCTTCATCAAGCACCCGAATCACTGAACCTTGTTGTGGTTCAAACATTCCCCACCATAACCCGTTTCCCATTTGAACCATACCCGGGTCCAAATCACTTCGTCAAGTTGCTCTCTCCTTCAGCTCCACATCATGCAGAAACCAACGAAACGAAAGATCTCGAAGGAATAGCTGCCATTGTTGGACAGCACGTCCTCTTCGGAGACAAAAACGACAAACCCAGTGAACACAAAACGGCAACGACCATTCCCGCGACACAAAACGATAACCTTTCGGTAAGTAAGAGATACAGAGGAGTGAGGAAGAGACCATGGGGGAGGTGGTCGGCGGAGATACGCGATCGAATCGGTCGGTGCCGCCACTGGCTCGGCACCTTCGACACAGCCGAGGATGCGGCGCGTGCGTATGACGCTGCGGCGAGGCGCTTGAGAGGCTCCAAAGCTCGAACAAACTTCGAGATACCCTCCGTTTTGCCTCTCTCTTCGCCGACAACTTCGTCTTCTTCGACCTCGGAAGTGAAGAAGATGACCAGTGGCGGGACTCATAAACCTAAAACCGTACGAAGCAGCGCTATAAGGAAATGCTCTGTGGTTACCTCTGTGGCTCAATTGTTCAGTGAGGTTCCTGAAGTTGGGAGAGGTAATAATAATAATCACCATCATAGCAATGTGGAGCTTGACTTGAAGTTAGGTGTGAGCTCTGTTGGGAGAAACACTAGTGATTAA 795 0.4994 MIFPHGKDKRVSYEFHKPIAITEMLHQAPESLNLVVVQTFPTITRFPFEPYPGPNHFVKLLSPSAPHHAETNETKDLEGIAAIVGQHVLFGDKNDKPSEHKTATTIPATQNDNLSVSKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEDAARAYDAAARRLRGSKARTNFEIPSVLPLSSPTTSSSSTSEVKKMTSGGTHKPKTVRSSAIRKCSVVTSVAQLFSEVPEVGRGNNNNHHHSNVELDLKLGVSSVGRNTSD 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi563g00009 264 MobiDBLite consensus disorder prediction 182 208 - -
Gabi563g00009 264 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Gabi563g00009 264 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Gabi563g00009 264 MobiDBLite consensus disorder prediction 233 264 - -
Gabi563g00009 264 SUPERFAMILY DNA-binding domain 119 176 IPR016177 GO:0003677
Gabi563g00009 264 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Gabi563g00009 264 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Gabi563g00009 264 MobiDBLite consensus disorder prediction 182 212 - -
Gabi563g00009 264 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Gabi563g00009 264 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Gabi563g00009 264 MobiDBLite consensus disorder prediction 91 110 - -
Gabi563g00009 264 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 99 233 - -
Gabi563g00009 264 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Gabi563g00009 264 FunFam Ethylene-responsive transcription factor 2 118 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi563g00009 Gabi-Chr563 69165 70125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi563g00009 39 182 AP2-EREBP Transcription Factor Family AT1G80580 53.472 1.44e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi563g00009 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi563g00009 - - aip:107614619 181.03