Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi563g00007 ATGAATCTTCTTGTTCTGTTCCTGTTGCCCATTTGGTTTCTAAGCATTTCTCTTTCATCAGCAATTCTTCACACTGCATCCCCCATTTCTGTTTCTCAATATTCTGCAAATGCACAAGCTGAATCTCCAGGAATGCAGGTTGTTAGAATAGTTCACCACCAGAACTTGAATAAGAGAATTCTGGTAGCACTGATTGTTTGTTCTTCTTTTCTTGGTGGAACCTTCCTATTCTTATCATATGTCTGGTTCTGTCGACATAAAAACTTATGGAGCTCAAGTAGTAAAAGCCAAGGAATCATGGAGGTTGCAAAAGGGGAAGCCTTAAGTTCTGTTAATGCTAAACTTAACTACTCAAAGATGGCAGATAAGAACAGTTCAGTTGCTATTTTCGACTTTCAGTTGTTAGAGTCTGCAACGAACAACTTTTGCAAAAGTAATATTATGGGAGAGACTGGTTCTAGAATTGTTTACAGAGCTCGTTTTGATGAACATTTTGAGGTAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAGGTGAGTTGGTTGAGCAAGATACGGCATCAGAATATCATAAAACTTCTGGGTTATTGTATTCATGGTGAATCGAGGTTTCTTGTTTATGAATTGATGGAGAATGGATCCCTGGAAACTCAATTGCATGGGCCTAATATCAGATCATCTTTAAGTTGGTATCTCCGTTTAAGAATTGCAGTTGATGTTGCCAGAGCATTAGAATATCTCCACGAGCACTGCAATCCTCCTGTGGTTCATAGAGACCTAAAATCTTCTAATGTTCTTCTGGATTCTAACTTTAATGCCAAGCTATCAGATTTTGGACTTGCTATATCTTCTGGGGTGCAACACAAGAACATGAAGATGTCGGGAACTTTGGGATATGTGGCACCTGAGTACATATCACATGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTTGGGGTTGTGCTTCTAGAACTTCTAACCGGAAGAAAACCCATGGAGAACATGTCCTCAAACCAATATCAATCCCTCGTTTCATGGGCCATGCCTCAGCTAACTGACAGAACGAAGCTTCCAAGTATTCTGGATCCTTTTATCAGAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCTGTGGCTGTACTTTGTGTGCAACCAGAACCAAGTTATAGGCCACTAATAACAGATGTCCTGCATTCCCTCATCCCTTTGGTACCAGTTGAGCTTGGAGGGTCACTCAGAGCTACAGAACCAGTTCGCTCAGAGAACTTAAACTGA 1299 0.4026 MNLLVLFLLPIWFLSISLSSAILHTASPISVSQYSANAQAESPGMQVVRIVHHQNLNKRILVALIVCSSFLGGTFLFLSYVWFCRHKNLWSSSSKSQGIMEVAKGEALSSVNAKLNYSKMADKNSSVAIFDFQLLESATNNFCKSNIMGETGSRIVYRARFDEHFEVAVKKADSDADREFENEVSWLSKIRHQNIIKLLGYCIHGESRFLVYELMENGSLETQLHGPNIRSSLSWYLRLRIAVDVARALEYLHEHCNPPVVHRDLKSSNVLLDSNFNAKLSDFGLAISSGVQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMSSNQYQSLVSWAMPQLTDRTKLPSILDPFIRNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGSLRATEPVRSENLN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi563g00007 432 SUPERFAMILY Protein kinase-like (PK-like) 118 408 IPR011009 -
Gabi563g00007 432 Gene3D Phosphorylase Kinase; domain 1 103 214 - -
Gabi563g00007 432 CDD STKc_IRAK 148 411 - -
Gabi563g00007 432 SMART serkin_6 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi563g00007 432 PANTHER OS01G0750732 PROTEIN 26 411 - -
Gabi563g00007 432 Gene3D Transferase(Phosphotransferase) domain 1 215 413 - -
Gabi563g00007 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Gabi563g00007 432 ProSiteProfiles Protein kinase domain profile. 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi563g00007 432 FunFam probable receptor-like protein kinase At1g80640 215 413 - -
Gabi563g00007 432 Pfam Protein tyrosine and serine/threonine kinase 156 361 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi563g00007 Gabi-Chr563 43829 47259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi563g00007 4 354 Receptor kinase-like Gene Family AT1G80640 48.098 7.65e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gabi563g00007 PK_Tyr_Ser-Thr 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi563g00007 - - gmx:100811188 712.22