Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi563g00001 ATGGCAGGTCTTGCTCCCAAAACCAAGGTTCTGAGAGATGGAAGGTGGACCGAGCAGGAGGCTGCTATATTGGTACCAGGAGACATAATCAGCATCAAATTAGGAGACATCGTCCCAGCTGATGCACGTCTCTTAGATGGAGATCCCCTGAAGATCGATCAATCTGCACTCACTGGTGAGTCTTTGCCTGTTACTAAGAACCCTGGTGATGAAGTCTTCTCTGGCTCAACAGTAAAACAAGGAGAGATTGAGGCTGTTGTAATCGCTACTGGGGTACACACCTTCTTCGGTAAGGCTGCACACTTGGTGGACAGCACTAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGTAACTTCTGCATTTGTTCAATTGCTGTGGGCATGATCATAGAGCTTGTTGTCATGTACCCGATTCAGCACCGCAAGTATAGGAATGGCATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCTATTGCCATGCCAACAGTGTTGTCAGTGACAATGGCTATTGGTTCCCATAGGTTGTCCGAGCAAGGTGCTATCACCAAGAGGATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTTTGTGCAGTGACAAGACTGGCACTCTAACACTGAACAAGCTTACTGTAGACAAGAGTTTGGTTGAGGTTTTTTCAAAAGATACTGACAAGGATCAAGTAATTTTGCTTGGAGCTAGGGCCTCTAGGGTAGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGATCCAAAGGAGGCTAGAGATGGAATTACAGAGGTGCATTTCCTTCCCTTTAATCCAGTGGACAAACGTACAGCAATAACATACATAGACACTGAGGGAAATTGGCACCGAGTAAGCAAAGGAGCACCAGAGCAGATTATCGAACTTTGCAATCTTCGTGAAGATGTGAAGAAGAAAGCTCATTCCATTATAGATAAATTTGCTGATCGTGGTCTTCGTTCCCTTGCTGTTGGAAAACAAGTGATACCAGAAAAGAACAAGGAGAGTGCAGGAGGACCATGGCAATTTGTGGGTCTGTTGCCTCTCTTTGACCCACCAAGGCATGACAGTGCAGAGACTATTCGTCGTGCTCTCCATTTAGGAGTGAACGTTAAGATGATTACTGGTGATCAACTAGCTATTGGGAAGGAAACTGGTCGCAGGCTTGGTATGGGAAGTAACATGTACCCTTCATCCTCACTCCTTGGAGAGCACAAAGATGAGTCTATTGCTGGCCTTCCAGTTGATGAACTTATTGAGAAAGCTGATGGCTTTGCTGGAGTCTTCCCAGAACATAAATATGAGATTGTGAAAAGACTTCAGGACAGGAAACACATATGTGGGATGACTGGAGATGGTGTGAATGATGCTCCTGCACTTAAAAGAGCAGATATTGGAATTGCAGTGGCTGATGCAACCGATGCAGCTCGAGGTGCATCTGATATAGTCCTCACGGAGCCAGGTTTGAGTGTCATTGTGACTGCAGTCATGACAAGCAGAGCCATTTTTCAGAGAATGAAGAACTACACAATATATGCTGTTTCTATAACAATCCGAATTGTGTTGGGCTTTATGCTTCTTGCTCTCATCTGGAAATTTGATTTCTCTCCTTTTATGGTTTTGATCATTGCCATACTTAATGATGGGACTATCATGACCATTTCCAAGGATAGGGTGAAGCCATCTCCTATGCCAGATTCATGGAAGCTGAGAGAGATTTTTGCCACAGGCATAGTGCTTGGTGCATACCTAGCTGTTATGACTGTAGTCTTCTTCTGGGCTGCTCATGCATCTGACTTCTTCACGGACAAATTTGGCGTGAGATCTATCAGGGACAGTCACCATGAACTGACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAAGCTCTCATCTTTGTTACTCGGTCAAGGAGCTGGTCTTACATTGAACGTCCTGGAGTCCTTCTTGTTGTTGCCTTTCTGATAGCACAGCTGATTGCCACAATCATAGCTGTGTATGGAGACTGGGGCTTTGCAAAAATGAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTGTTTTCTACATTCCCTTGGATATCCTTAAATTCATCATCCGATATGCATTGAGTGGCAAGGCGTGGAATAATATTACTGAGAATAGGACTGCTTTCACATCAAAGAAGGATTATGGAAGGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTACATGGCCTCAATCCTCCTGAAACAGACCAAATCTTGAATGAAAATAATAACTACAGGGACTTGTCTGAACTTGCAGAACAGGCTAGGAAACGTGCTGAAGTTGCAAGGTTAAGGGAGCTTCACACACTGAAGGGGCATGTCGAGTCTGTTGTGAAACTCAAGGGACTTGACATTGAAACAATTCAGCAGCACTACACTGTTTGA 2478 0.4483 MAGLAPKTKVLRDGRWTEQEAAILVPGDIISIKLGDIVPADARLLDGDPLKIDQSALTGESLPVTKNPGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIELVVMYPIQHRKYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLVEVFSKDTDKDQVILLGARASRVENQDAIDACIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDTEGNWHRVSKGAPEQIIELCNLREDVKKKAHSIIDKFADRGLRSLAVGKQVIPEKNKESAGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESIAGLPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVTAVMTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGIVLGAYLAVMTVVFFWAAHASDFFTDKFGVRSIRDSHHELTAAVYLQVSIVSQALIFVTRSRSWSYIERPGVLLVVAFLIAQLIATIIAVYGDWGFAKMKGIGWGWAGVIWLYSIVFYIPLDILKFIIRYALSGKAWNNITENRTAFTSKKDYGRGEREAQWAAAQRTLHGLNPPETDQILNENNNYRDLSELAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi563g00001 825 PRINTS P-type cation-transporting ATPase superfamily signature 462 481 - -
Gabi563g00001 825 PRINTS P-type cation-transporting ATPase superfamily signature 485 497 - -
Gabi563g00001 825 PRINTS P-type cation-transporting ATPase superfamily signature 357 368 - -
Gabi563g00001 825 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Gabi563g00001 825 PRINTS P-type cation-transporting ATPase superfamily signature 379 389 - -
Gabi563g00001 825 PRINTS P-type cation-transporting ATPase superfamily signature 53 67 - -
Gabi563g00001 825 Gene3D - 6 90 - -
Gabi563g00001 825 SUPERFAMILY Calcium ATPase, transmembrane domain M 103 721 IPR023298 -
Gabi563g00001 825 FunFam Plasma membrane ATPase 355 510 - -
Gabi563g00001 825 ProSitePatterns E1-E2 ATPases phosphorylation site. 205 211 IPR018303 -
Gabi563g00001 825 CDD P-type_ATPase_H 1 715 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi563g00001 825 FunFam Plasma membrane ATPase 215 362 - -
Gabi563g00001 825 SUPERFAMILY HAD-like 199 511 IPR036412 -
Gabi563g00001 825 SFLD Haloacid Dehalogenase 185 513 - -
Gabi563g00001 825 NCBIfam HAD-IC family P-type ATPase 7 237 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi563g00001 825 NCBIfam HAD-IC family P-type ATPase 437 547 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi563g00001 825 Gene3D - 200 499 IPR023214 -
Gabi563g00001 825 Pfam E1-E2 ATPase 5 182 - -
Gabi563g00001 825 SFLD p-type atpase 185 513 IPR044492 -
Gabi563g00001 825 NCBIfam plasma-membrane proton-efflux P-type ATPase 2 680 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi563g00001 825 FunFam ATPase 4 plasma membrane-type 448 689 - -
Gabi563g00001 825 FunFam Plasma membrane ATPase 6 90 - -
Gabi563g00001 825 SUPERFAMILY Calcium ATPase, transduction domain A 6 103 IPR008250 -
Gabi563g00001 825 Gene3D - 3 689 - -
Gabi563g00001 825 Gene3D - 215 362 IPR023299 GO:0000166
Gabi563g00001 825 PANTHER CALCIUM-TRANSPORTING ATPASE 1 757 - -
Gabi563g00001 825 Gene3D - 774 825 - -
Gabi563g00001 825 Coils Coil 769 796 - -
Gabi563g00001 825 PRINTS H+-transporting ATPase (proton pump) signature 319 337 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi563g00001 825 PRINTS H+-transporting ATPase (proton pump) signature 493 518 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi563g00001 825 PRINTS H+-transporting ATPase (proton pump) signature 634 655 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi563g00001 825 PRINTS H+-transporting ATPase (proton pump) signature 462 478 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi563g00001 825 PRINTS H+-transporting ATPase (proton pump) signature 434 450 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi563g00001 825 Pfam haloacid dehalogenase-like hydrolase 199 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi563g00001 Gabi-Chr563 18532 23687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi563g00001 6 825 Primary Pumps ATPases AT2G07560 83.902 0.0 1439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi563g00001 K01535 - gmx:100782329 1518.83