Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi562g00006 ATGGATCATGTAGCATCACAAGGTCGTCCTCTACCACCTCCTTTTCTCACTAGAGGAGATCTTCATCTAAACCCTCATCACCAATTCCAACCTCATCATCTCCATAACCACCATAACAACACCCAACAACAACAACAAGAAGAAGATGTTGATGATGATGATGACGATGAGAAGCGCAACAATAACCATAACCATAACCACTTCTTGAACAGAACCCTAAAACGAGATCGAGATCACGAAAACAACACCACCGCTGCCAACACCGCCGACACCGCCGTGGACGGCAAAGAAGGTGAGATGAGTATAAGAAGACCTAGAGGAAGACCTGCAGGCTCAAAGAACAACCCAAAGCCACCAATCATCATCTCCAGAGACAGTGCCAACACGCTCCGATCACATGTCATGGAAATCGGCGACGGTTGCGACGTCGTTGACGGTATCGCCGCCTTTGCGCGGCGGAGACAGCGCGGAGTTTGCATTCTGAGTGCCACCGGCACCGTCGCCAACGTAACCCTAAGGCAACCAGCTACTGCCGGTGCAGTTGTGCCGTTACATGGAAGATTCGAGATCTTGTCCTTGTCCGGGTCGTTTCTTCCGCCGCCGGCGGCATCCGGCATGGCCATATATCTGGCCGGTGCACAAGGTCAGGTGGTTGGTGGCAGCGTGGTGGGGCCCTTGGTGGCTTCCGGTCCGGTGGTTATCATGGCGGCTTCATTCGGTAATGCAACATATGAAAGGCTGCCGTTGGAGGAGGAAGATGAGGAGGCGTCGCCGCCGGTGGCGGTGCATGGTGGAGGAGGGTTAGGGTTAGGGTCAGGGTCAGCTGGAATTGTAGGACAGCATCAACATCAACATCACCAACAACCACAACATCATCAACAACAACAACAACTAGTGGCAGATCATCACAATACTTCAATGTTTCATGGGGTTCCTCAGAATCTTCTCAATTCATGTCAATTACCAGCTGCTGCCACTGAGGGTTATTGGGGTGCCACTCGCCCTTCTTTTTAA 1014 0.5197 MDHVASQGRPLPPPFLTRGDLHLNPHHQFQPHHLHNHHNNTQQQQQEEDVDDDDDDEKRNNNHNHNHFLNRTLKRDRDHENNTTAANTADTAVDGKEGEMSIRRPRGRPAGSKNNPKPPIIISRDSANTLRSHVMEIGDGCDVVDGIAAFARRRQRGVCILSATGTVANVTLRQPATAGAVVPLHGRFEILSLSGSFLPPPAASGMAIYLAGAQGQVVGGSVVGPLVASGPVVIMAASFGNATYERLPLEEEDEEASPPVAVHGGGGLGLGSGSAGIVGQHQHQHHQQPQHHQQQQQLVADHHNTSMFHGVPQNLLNSCQLPAAATEGYWGATRPSF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi562g00006 337 MobiDBLite consensus disorder prediction 275 299 - -
Gabi562g00006 337 FunFam AT-hook motif nuclear-localized protein 130 255 - -
Gabi562g00006 337 Gene3D - 130 255 - -
Gabi562g00006 337 CDD DUF296 131 239 IPR005175 -
Gabi562g00006 337 MobiDBLite consensus disorder prediction 56 83 - -
Gabi562g00006 337 PIRSF ESCAROLA 20 337 IPR014476 GO:0003680
Gabi562g00006 337 MobiDBLite consensus disorder prediction 277 299 - -
Gabi562g00006 337 ProSiteProfiles PPC domain profile profile. 127 261 IPR005175 -
Gabi562g00006 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 301 IPR014476 GO:0003680
Gabi562g00006 337 MobiDBLite consensus disorder prediction 1 121 - -
Gabi562g00006 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 240 IPR005175 -
Gabi562g00006 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi562g00006 Gabi-Chr562 107207 108389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi562g00006 60 337 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 51.943 9.71e-76 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi562g00006 - - gmx:100816243 289.271