Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi562g00002 ATGTTAGAGAGAGAAACTAAGAAGAGGATGGATTGTGGAGGTGATAGAGGTGGGCCATGTGGTGCCTGCAAGTTCCTAAGGAGAAAGTGCAAAAAGGGTTGCATATTTGCACCATATTTTGACTCAGCTCAAGGTGCTGCTAATTTTGCTGCAGTGCATAAGGTGTTTGGTGCTAGCAATGCCTCTAAGCTACTCATGTGCATCCCAGTTCACAAGCGTCTTGATGCTGTTGTTACTCTCTGCTATGAGGCTCTTGCTAGGGCCAGAGACCCTGTTTATGGCTCTGTTGGTCACATCTTTGCTCTTCAACAACAGGTTGTGAACTTGCAAGCAGAGTTAGCATATGTTCATGCTCGTCTTTCCACATTGCATATCCTCTCTGTAGCACCTCCATTTCCACAGCCTCAAAGCTCTTCTCCCCCAAGTCTGCATTCCTCCTCATATCATCATTTGGCATAA 459 0.4597 MLERETKKRMDCGGDRGGPCGACKFLRRKCKKGCIFAPYFDSAQGAANFAAVHKVFGASNASKLLMCIPVHKRLDAVVTLCYEALARARDPVYGSVGHIFALQQQVVNLQAELAYVHARLSTLHILSVAPPFPQPQSSSPPSLHSSSYHHLA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi562g00002 152 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 130 - -
Gabi562g00002 152 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Gabi562g00002 152 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi562g00002 Gabi-Chr562 11896 15822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi562g00002 22 148 AS2 family AT2G45410 69.231 8.67e-61 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi562g00002 LOB 2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi562g00002 - - gmx:100791377 206.068