Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi55g00003 ATGTTTGGGCGTGGACAAAAGAAGAGTGATAGCACCAAATATTATGATGTTCTTGGTGTTTCAAAAAGTGCTAGTGAAGATGAAATCAAGAAGGCTTATAGGAAGGCAGCAATGAAGAACCATCCAGATAAGGGTGGAGATCCTGAGAAGTTCAAGGAGTTAAGCCAAGCATATGAAGTTTTAAGTGATGCTGAAAAGAGGGAAATGTATGACCAATATGGTGAAGATGCCCTTAAAGAAGGGATGGGGGGAGGGGGCTCATTTAATAATCCATTTGATATATTTGAATCATTTTTTGGTGGTGGAGCAGGCTTTGGTGCTGGTGGTAGTTCACGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTCTTAAGGTTTCCTTGGAGGACGTGTATAATGGCACAACAAAAAAACTATCTCTTTCTAGAAATGTGTTATGCTCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACAGGTATGAAGATTACAAGAAGGCAGATTGGAATGGGCATGATTCAACAAATGCAACACGTCTGTCCTGAATGCAGAGGAACTGGTGAGGTCATTAGTGAAAGAGATCGATGCCCTCAGTGCAAGGGAAACAAGGTTAGCCAGGAAAAGAAGGTGCTGGAGGTGAATGTTGAGAAGGGGATGCAGCAGGGTCAGAAGATTGTGTTTGAAGGACAAGCTGATGAAGCTCCTGACACAATCACAGGAGACATTGTTTTTGTCGTACAAGTAAAGGAGCACCCAAGGTTCAGGAGGGAGCACGATGATCTCTATATTGATCAGAATCTCACCTTAAGTGAGGCACTTTGTGGCTTCCAGTTTGCTGTCACCCATCTTGACGGGAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTTATCAGGCCAGGTCAACATAAAGCAATAAACGATGAGGGAATGCCACAGCACAATAGGCCCTTCATTAAGGGGCGCCTTTTCATCAAGTTTAATGTTGATTTTCCAGATTCAGGGTTCCTTTCCCCTGATCAGTGCCAGTTATTAGAAAAGGAATTACCTCAGAAGACCAGCAACCATTTGTCAGATATGGAGCTGGATAATTGTGAGGAAACCACTTTGCATGATGTCAACATTAAGGAGGAGATGAGACGAAAGAAGCAACAGCAATACCAAGAGGCATATGATGAAGATGATGACGAGCCATCCATGCCACGAGTACAATGTGCTCAACAATAG 1263 0.4323 MFGRGQKKSDSTKYYDVLGVSKSASEDEIKKAYRKAAMKNHPDKGGDPEKFKELSQAYEVLSDAEKREMYDQYGEDALKEGMGGGGSFNNPFDIFESFFGGGAGFGAGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTKKLSLSRNVLCSKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGMGMIQQMQHVCPECRGTGEVISERDRCPQCKGNKVSQEKKVLEVNVEKGMQQGQKIVFEGQADEAPDTITGDIVFVVQVKEHPRFRREHDDLYIDQNLTLSEALCGFQFAVTHLDGRQLLIKSNPGEVIRPGQHKAINDEGMPQHNRPFIKGRLFIKFNVDFPDSGFLSPDQCQLLEKELPQKTSNHLSDMELDNCEETTLHDVNIKEEMRRKKQQQYQEAYDEDDDEPSMPRVQCAQQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi55g00003 420 CDD DnaJ 14 63 IPR001623 -
Gabi55g00003 420 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Gabi55g00003 420 SMART dnaj_3 12 66 IPR001623 -
Gabi55g00003 420 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Gabi55g00003 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 353 IPR008971 GO:0006457|GO:0051082
Gabi55g00003 420 Pfam DnaJ domain 13 71 IPR001623 -
Gabi55g00003 420 Gene3D - 264 345 - -
Gabi55g00003 420 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gabi55g00003 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
Gabi55g00003 420 MobiDBLite consensus disorder prediction 389 420 - -
Gabi55g00003 420 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 217 IPR036410 -
Gabi55g00003 420 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gabi55g00003 420 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gabi55g00003 420 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gabi55g00003 420 FunFam DnaJ subfamily A member 2 149 215 - -
Gabi55g00003 420 Hamap Chaperone protein DnaJ [dnaJ]. 10 390 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gabi55g00003 420 Gene3D DnaJ domain 10 110 IPR036869 -
Gabi55g00003 420 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Gabi55g00003 420 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 402 IPR044713 GO:0006457|GO:0030544
Gabi55g00003 420 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Gabi55g00003 420 CDD DnaJ_C 120 346 - -
Gabi55g00003 420 Gene3D - 149 215 - -
Gabi55g00003 420 Gene3D - 111 263 - -
Gabi55g00003 420 FunFam DnaJ subfamily A member 2 263 345 - -
Gabi55g00003 420 FunFam Chaperone protein DNAj, putative 10 111 - -
Gabi55g00003 420 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Gabi55g00003 420 SUPERFAMILY Chaperone J-domain 8 110 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi55g00003 Gabi-Chr55 12660 16134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi55g00003 14 73 C2H2 Transcription Factor Family AT1G74250 46.377 2.15e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi55g00003 K09503 - gmx:100812236 727.243