Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi55g00002 ATGTTTGGGCGTGGACAAAAGAAGAGTGATAGCACCAAATATTATGATGTTCTTGGTGTTTCAAAAAGTGCTAGTGAAGATGAAATCAAGAAGGCTTATAGGAAGGCAGCAATGAAGAACCATCCAGATAAGGGTGGAGATCCTGAGAAGTTCAAGGAGTTAAGCCAAGCATATGAAGTTTTAAGTGATGCTGAAAAGAGGGAAATGTATGACCAATATGGTGAAGATGCCCTTAAAGAAGGGATGGGGGGAGGGGGCTCATTTAATAATCCATTTGATATATTTGAATCATTTTTTGGTGGTGGAGCAGGCTTTGCTGGTGGTAGTTCACGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTCTTAAGGTTTCCTTGGAGGACGTGTATAATGGCACAACAAAAAAACTATCTCTTTCTAGAAATGTGTTATGCTCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGATGCCAAGGCACAGGTATGAAGATTACAAGAAGGCAGATTGGAATGGGCATGATTCAACAAATGCAACACGTCTGTCCTGAATGCAGAGGAACTGGTGAGGTCATTAGTGAAAGAGATCGATGCCCTCAGTGCAAGGGAAACAAGGTTAGCCAGGAAAAGAAGGTGCTGGAGGTGAATGTTGAGAAGGGGATGCAGCAGGGTCAGAAGATTGTGTTTGAAGGACAAGCTGATGAAGCTCCTGACACAATCACAGGAGACATTGTTTTTGTCGTACAAGTAAAGGAGCACCCAAGGTTCAGGAGGGAGCACGATGATCTCTATATTGATCAGAATCTCACCTTAAGTGAGGCACTTTGTGGCTTCCAGTTTGCTGTCACCCATCTTGACGGGAGGCAACTATTGATCAAATCAAATCCTGGGGAAGTTATCAGGCCAGGTCAACATAAAGCAATAAACGATGAGGGAATGCCACAGCACAATAGGCCCTTCATTAAGGGGCGCCTTTTCATCAAGTTTAATGTTGATTTTCCAGATTCAGGGTTCCTTTCCCCTGATCAGTGCCAGTTATTAGAAAAGGAATTACCTCAGAAGACCAGCAACCATTTGTCAGATATGGAGCTGGATAATTGTGAGGAAACCACTTTGCATGATGTCAACATTAAGGAGGAGATGAGACGAAAGAAGCAACAGCAATACCAAGAGGCATATGATGAAGATGATGACGAGCCATCCATGCCACGAGTACAATGTGCTCAACAATAG 1260 0.4317 MFGRGQKKSDSTKYYDVLGVSKSASEDEIKKAYRKAAMKNHPDKGGDPEKFKELSQAYEVLSDAEKREMYDQYGEDALKEGMGGGGSFNNPFDIFESFFGGGAGFAGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTKKLSLSRNVLCSKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGMGMIQQMQHVCPECRGTGEVISERDRCPQCKGNKVSQEKKVLEVNVEKGMQQGQKIVFEGQADEAPDTITGDIVFVVQVKEHPRFRREHDDLYIDQNLTLSEALCGFQFAVTHLDGRQLLIKSNPGEVIRPGQHKAINDEGMPQHNRPFIKGRLFIKFNVDFPDSGFLSPDQCQLLEKELPQKTSNHLSDMELDNCEETTLHDVNIKEEMRRKKQQQYQEAYDEDDDEPSMPRVQCAQQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi55g00002 419 FunFam DnaJ subfamily A member 2 262 344 - -
Gabi55g00002 419 CDD DnaJ 14 63 IPR001623 -
Gabi55g00002 419 SMART dnaj_3 12 66 IPR001623 -
Gabi55g00002 419 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Gabi55g00002 419 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Gabi55g00002 419 Pfam DnaJ domain 13 71 IPR001623 -
Gabi55g00002 419 MobiDBLite consensus disorder prediction 388 419 - -
Gabi55g00002 419 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gabi55g00002 419 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gabi55g00002 419 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gabi55g00002 419 CDD DnaJ_C 119 345 - -
Gabi55g00002 419 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gabi55g00002 419 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Gabi55g00002 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Gabi55g00002 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 352 IPR008971 GO:0006457|GO:0051082
Gabi55g00002 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 216 IPR036410 -
Gabi55g00002 419 Hamap Chaperone protein DnaJ [dnaJ]. 10 389 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gabi55g00002 419 Gene3D - 110 262 - -
Gabi55g00002 419 Gene3D DnaJ domain 10 109 IPR036869 -
Gabi55g00002 419 Gene3D - 263 344 - -
Gabi55g00002 419 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Gabi55g00002 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 401 IPR044713 GO:0006457|GO:0030544
Gabi55g00002 419 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Gabi55g00002 419 Gene3D - 148 214 - -
Gabi55g00002 419 FunFam Chaperone protein DNAj, putative 10 111 - -
Gabi55g00002 419 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Gabi55g00002 419 FunFam DnaJ subfamily A member 2 148 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi55g00002 Gabi-Chr55 12658 16136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi55g00002 14 73 C2H2 Transcription Factor Family AT1G74250 46.377 2.14e-10 60.8