Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi559g00005 ATGGCGTTGTCAGAAAGGAAAGGGAGCTTTACTCGAGAGGAGGATGAACGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGATTCAAGTAGCTAAATTTGTTCCTGGAAGGACCCAATCTCAGTGTAGGGACAGATACCTCAATAGTTTGGACCCTTCTTTGAAATGGGGTGGATGGACTAAGGAAGAGGATTTAAGATTAGAAGCTGCAATTGTCAAGCATAGATTCTGCTGGTCTAAGGTTGCTGAAGATGTGCCTCCTCGCACTGATTCTCAATGCCGGAAGAGATGGAAGGTGTTATTTCCTGATCAAGTTCCTTTGCTTCAAGAGGCAAGAAAGACTCTAAAGTCTTATCTTGCTAGTAAATTTGCTGCTATGTCATTTCTTTTTCTCTAG 402 0.4254 MALSERKGSFTREEDERLTVAVMLFGRKWIQVAKFVPGRTQSQCRDRYLNSLDPSLKWGGWTKEEDLRLEAAIVKHRFCWSKVAEDVPPRTDSQCRKRWKVLFPDQVPLLQEARKTLKSYLASKFAAMSFLFL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi559g00005 133 Gene3D - 3 57 - -
Gabi559g00005 133 Pfam Myb-like DNA-binding domain 10 69 - -
Gabi559g00005 133 CDD SANT 9 52 IPR001005 -
Gabi559g00005 133 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 6 126 - -
Gabi559g00005 133 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Gabi559g00005 133 SUPERFAMILY Homeodomain-like 32 106 IPR009057 -
Gabi559g00005 133 CDD SANT 61 103 IPR001005 -
Gabi559g00005 133 ProSiteProfiles Myb-like domain profile. 2 52 IPR001005 -
Gabi559g00005 133 Gene3D - 58 102 - -
Gabi559g00005 133 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Gabi559g00005 133 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 52 IPR017930 -
Gabi559g00005 133 SMART sant 57 105 IPR001005 -
Gabi559g00005 133 SMART sant 6 54 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi559g00005 Gabi-Chr559 117876 118633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi559g00005 6 125 MYB-Related Transcription Factor Family AT3G18100 53.719 2.71e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi559g00005 Myb_DNA-bind_6 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi559g00005 K09422 - gmx:778073 211.46