Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi552g00008 ATGGCTTCCATGAAAGACTTCAAAGCAAGTGAACTCTTTCAAGCTCAAGCTCACTTGTACAAACACATGTTTAACATCATTAGTCCCATGTGTATCAAGTGGGCCGTTAACCTTGGCATACCTGATATCATTCACAAGCATGGTCAACCCATTACTCTTCATGAACTTGTTTCATCTCTCCATGTTCCTCATTCTAAAGCTACTTGTGTCCAACGTCTCATGCGCTTATTGTCACTCAATGACTTCTTTGCAATCATCAAAACCGATGACACCAAAGAAGCGTATGCTCTTACTCCTTCATCACAACTCCTTGTCAAAGGCACTGACTATTGTTTGTCTTCAATGGTTCATTTGATAAACCACCCAACTCTTGTTGGTTTATTCCATCAGTTGGATAAATGGACTTCTGGTGAGGACCCCACAATCTTTGAGACTGCATCAGGTCCCGGAGCTTTTTGGGATTTTATTCATCAAAATACTACGGATATGGAGAACTTCAATGAGGCCATGGAAAGTGATTCTCGTATGGTAAAGTTGGCTTTGAATGATTGCAAATCAGTTTTTGAGGGCTTGGATTCTCTAGTTGATGTTGGTGGCGGAACTGGAAACACAGCTAAGATAATTTGCAAAGCATTTCCTAATTTAAAATGCACGGTGTTGGATCTTCCACAAGTTGTAGCAGACTTATCTGGAAATAATAATTTGAGTTATGTTGGTGGGAACATGTTTGAATCTATCCCTCATGCTGATGCAATTTTACTCAAGTGGGTTTTACATGACTGGAATGATGATGATTGCATAAAGATACTTAGAAATTGTAAAGAAGCTATTTCAGGTAAAGGAGGAAAAGTGATAATCATAGATACTGTGATAAATGAAAAGGAAGATGAGCATGAAATGACAGAATTAAAGATCCTTTTCGACATTGCAATGATGACTTTGCATAATGGAAAAGAGAGAGATGAAAAGGATTGGAAACAAATCTTTGTCAGAGCAGGCTTCGAACATTACAAAATATTCCCTATGTTTGGTTTTAGGTCCCTTGTTGAACTGTATCCCTAA 1062 0.3832 MASMKDFKASELFQAQAHLYKHMFNIISPMCIKWAVNLGIPDIIHKHGQPITLHELVSSLHVPHSKATCVQRLMRLLSLNDFFAIIKTDDTKEAYALTPSSQLLVKGTDYCLSSMVHLINHPTLVGLFHQLDKWTSGEDPTIFETASGPGAFWDFIHQNTTDMENFNEAMESDSRMVKLALNDCKSVFEGLDSLVDVGGGTGNTAKIICKAFPNLKCTVLDLPQVVADLSGNNNLSYVGGNMFESIPHADAILLKWVLHDWNDDDCIKILRNCKEAISGKGGKVIIIDTVINEKEDEHEMTELKILFDIAMMTLHNGKERDEKDWKQIFVRAGFEHYKIFPMFGFRSLVELYP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi552g00008 353 CDD AdoMet_MTases 194 291 - -
Gabi552g00008 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 351 IPR029063 -
Gabi552g00008 353 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Gabi552g00008 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Gabi552g00008 353 Gene3D - 1 104 IPR036388 -
Gabi552g00008 353 FunFam Coniferyl alcohol 9-O-methyltransferase 2 104 - -
Gabi552g00008 353 FunFam O-methyltransferase ZRP4 106 353 - -
Gabi552g00008 353 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Gabi552g00008 353 PANTHER O-METHYLTRANSFERASE 11 338 IPR016461 GO:0008168
Gabi552g00008 353 Pfam O-methyltransferase domain 129 335 IPR001077 GO:0008171
Gabi552g00008 353 Gene3D Vaccinia Virus protein VP39 105 353 IPR029063 -
Gabi552g00008 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 353 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi552g00008 Gabi-Chr552 146355 147581 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi552g00008 27 351 Monolignol Biosynthesis Gene Families AT5G54160 33.134 1.09e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi552g00008 K22588 - gmx:100818947 429.098