Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi552g00003 ATGGATTTCAGTACCAATGGCACTGAAGAAAATGAACTGTATCATGCTCAAATCCATTTGTACAAGCATGTATACAACTTCGTAAGCTCCATGGCTCTTAAGTCTGCTATGGAGTTAGGGGTAGCAGACATAATCCATGACCATGGAAAACCCATCACCCTTCCTGAATTGGCTTCAGCTTTGAAACTTCACCCCTCAAAAGTCAGTGTCCTCCATCGGTTCTTGCGCCTCCTAACACACAATGGATTCTTTGCCAAAGTTCAAGTCAAAGAAGGAGAACAAGAAGAAGAAGCATATGTTCTGACTCCTCCATCGAAGCTTCTCATCAGAAGCAAGCCAACATGTTTAGCACCAATAGTTCGAGGAGCACTTCATTCAAGTTCGCTAGACATGTGGAGTGCCTCAAAGAAATGGTTCACTGAGGATAAGGAACAAACGCTATTTGAGAGCGCAACAGGGGAGAGCTTCTGGCACTTTCTTAACAAAGATTCTGATACATTGAGCATGTTTCAAGAGGCCATGGCAGCTGATTCCCGCATATTCAAGCTAGCTCTTGAGGAATGCAAACATGTATTTGAGGGTTTGGGTTCCATTGTCGATGTTGGAGGCGGCACTGGTGGCGTCACAAAGCTCATCCATGAAGCATTCCCTCACTTGAAATGCATAGTATTTGACCAACCAGAGGTTGTGGCTAACTTGTCTGGTGATGAAAATTTGAGTTTTGTTGGTGGAGATATGTTCAAGTCCATCCCTTCTGCTGATGCTGTTTTACTCAAGTGGGTTCTGCATGACTGGAATGACGAACTCTCCTTGAAGATATTGAAGAACTGCAAAGAAGCTATTTCAGGGAAAGGGAAAGAAGGAAAGGTGATTATCATAGACATATCAATTGATGAAACAAGTGATGGTCGCGAATTGACTGAGTTGAAACTGGACTATGACTTGGTTATGCTGACTATGTTCAACGGAAAAGAAAGAGAAAAGAAAGAATGGGACAAACTCATATCCGAGGCTGGCTTCAGCAACTACAAGATTACCCCCATTTGTGGCTTCAAGTCTCTCATCGAAGTTTTTCCTTAA 1080 0.4296 MDFSTNGTEENELYHAQIHLYKHVYNFVSSMALKSAMELGVADIIHDHGKPITLPELASALKLHPSKVSVLHRFLRLLTHNGFFAKVQVKEGEQEEEAYVLTPPSKLLIRSKPTCLAPIVRGALHSSSLDMWSASKKWFTEDKEQTLFESATGESFWHFLNKDSDTLSMFQEAMAADSRIFKLALEECKHVFEGLGSIVDVGGGTGGVTKLIHEAFPHLKCIVFDQPEVVANLSGDENLSFVGGDMFKSIPSADAVLLKWVLHDWNDELSLKILKNCKEAISGKGKEGKVIIIDISIDETSDGRELTELKLDYDLVMLTMFNGKEREKKEWDKLISEAGFSNYKITPICGFKSLIEVFP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi552g00003 359 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Gabi552g00003 359 Gene3D Vaccinia Virus protein VP39 110 359 IPR029063 -
Gabi552g00003 359 Pfam O-methyltransferase domain 132 341 IPR001077 GO:0008171
Gabi552g00003 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 359 IPR016461 GO:0008168
Gabi552g00003 359 PANTHER O-METHYLTRANSFERASE 15 344 IPR016461 GO:0008168
Gabi552g00003 359 FunFam O-methyltransferase ZRP4 111 359 - -
Gabi552g00003 359 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Gabi552g00003 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 357 IPR029063 -
Gabi552g00003 359 FunFam Coniferyl alcohol 9-O-methyltransferase 3 108 - -
Gabi552g00003 359 Gene3D - 2 108 IPR036388 -
Gabi552g00003 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi552g00003 Gabi-Chr552 101028 102769 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi552g00003 28 346 Monolignol Biosynthesis Gene Families AT5G54160 34.365 5.35e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi552g00003 K22588 - gmx:106795493 583.563