Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi552g00001 ATGGCGGGTTTGATTGATCTCAACACCACGGAGGACGATGAAACGCCGTCGTCTGGTTCCTCCTCTGGTACAAGCTTAAGCACAACATGTGCTGCTTCAGCTTCCTCTGTGTGCTTGGAGTTGTGGCACGCGTGTGCGGGTCCAATGATCTCTCTGCCAAAGAAAGGAAGCGTTGTTGTGTACTTCCCTCAGGGACACTTGGAACATCTTCAGGATTTTCCGCTCTCTGCTTGTAATAACATCCCACCCCATGTGTTATGTCGTGTTGTAGATGTCAAGCTTCATGCGGAGGAAGGGAGCGATGAAGTGTATTGTCAGGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGCAGCAAAAGTTGCGGGAAGGAAAATTTGATGCTGATGGTGAAGAGGATGATACTGAAGCTGTGATGAAGTCAACAACACCCCACATGTTCTGCAAGACTCTTACTGCATCTGATACTAGTACTCATGGTGGATTCTCTGTGCCTCGTCGAGCTGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAAGAGCTTGTGGCAAAGGATCTGCATGGCCAAGAATGGAGGTTTCGACATATTTATAGGGGGCAGCCACGGAGACATTTGCTTACAACCGGTTGGAGTGCATTTGTGAACAAGAAGAAGCTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGACGATGGAGAACTGAGATTGGGAATTCGTAGGGCAGCTCAATTGAAAAATGGCAGTACTTTTTCATCTCTTTCTGGCCAGCAATTGAATCTTAGCAGTCTTATGGATGTGGTTAATGCTTTGTCTACTAGATGTGCCTTTAGCATTCACTATAATCCGAGGGTCAGCTCATCTGAATTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGATGCGATTTGAAACAGAAGATGCTGCTGAGCGAAGATACACAGGGTTAATTGTTGGAATCACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTACTGGTGAGGTGGGATGACTTAGAAGCCACAAGGCATAATAGGGTTTCCCCATGGGAGATTGAGCGATTTGGTTCTGCTTCCACTGCCAATAACTTGATGGCAACTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCAAAGCCAGAATTATCAGTTCCCAATGGGATTGGGACATCAGACTTCGGGGAATCATCAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTTGGTGCTAATACTACATTTGATGGTATTAGTGCTCAGAGTCACCAGTTATCTGAATTAAGGAGGTGCTATCCAGGTTCAAACTGTCCTGGAATTGCTGCAACAGGAAATAGTATCAGAATCCCACATGCGAGTTCGGATGTTTCCTGCAATGGCATAGGCTTCAGTGAATCTTACCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGAGCCTTTCCTGCTGATGAGGCTTGTGGAAATGGTTGCTTTGGACTTTTTGATGGTTACCAGGCATCAAGATCCAGAAATGGATGGACTGCCCAGATGAATAACAATTCTTCACATTTGCATCCAACTATTCCATATGGGCAAGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTCAATCTTTCAAACTCAGATTATAATAACAAAATCAATCAGGTGATGGAGGGTAAAGTCCATCATAGAGGTTCATATGCTTCTGAATTGAAAGGTGGAACATTTGCATCAACCCCCTCTTATGAGCCTAGTTTCCGTGGGCAAGCTCATGATTCAATTTCAGCTCTCGGAGGCAGTCAAGAGTTGGTTTCCTCATGTAAAAATAGCTGCAGAGTCTTTGGTTTTTCATTAACTGAGGGTTCTCTTATTGCAAATAAAGAGGCTGACCCATCTCCATCAACTAGTCAATTAAATTCTGAACCTTCCTTTACAAGACATGTTGAAGATGATTTCCATACCGGGCATTCGCTTAGGAGCAAGGCGGTTGGAAGTTACTTTACCAAAGGTGTACTGCAGTATTGA 2106 0.4435 MAGLIDLNTTEDDETPSSGSSSGTSLSTTCAASASSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLQDFPLSACNNIPPHVLCRVVDVKLHAEEGSDEVYCQVLLVPESEQVQQKLREGKFDADGEEDDTEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKNGSTFSSLSGQQLNLSSLMDVVNALSTRCAFSIHYNPRVSSSEFIIPIHKFLKSLDYSYSVGMRFRMRFETEDAAERRYTGLIVGITDVDPVRWPGSKWRCLLVRWDDLEATRHNRVSPWEIERFGSASTANNLMATGLKRTKIGLPSAKPELSVPNGIGTSDFGESSRFQKVLQGQEIFGANTTFDGISAQSHQLSELRRCYPGSNCPGIAATGNSIRIPHASSDVSCNGIGFSESYRFQKVLQGQEILPSQPYGRAFPADEACGNGCFGLFDGYQASRSRNGWTAQMNNNSSHLHPTIPYGQVSSPSSVLMFQQAVNLSNSDYNNKINQVMEGKVHHRGSYASELKGGTFASTPSYEPSFRGQAHDSISALGGSQELVSSCKNSCRVFGFSLTEGSLIANKEADPSPSTSQLNSEPSFTRHVEDDFHTGHSLRSKAVGSYFTKGVLQY 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi552g00001 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 36 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi552g00001 701 Gene3D - 309 383 - -
Gabi552g00001 701 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Gabi552g00001 701 Pfam Auxin response factor 273 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi552g00001 701 Gene3D - 144 248 IPR015300 -
Gabi552g00001 701 SMART B3_2 146 248 IPR003340 GO:0003677
Gabi552g00001 701 FunFam Auxin response factor 144 248 - -
Gabi552g00001 701 CDD B3_DNA 144 246 IPR003340 GO:0003677
Gabi552g00001 701 MobiDBLite consensus disorder prediction 1 25 - -
Gabi552g00001 701 SUPERFAMILY DNA-binding pseudobarrel domain 138 254 IPR015300 -
Gabi552g00001 701 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Gabi552g00001 701 MobiDBLite consensus disorder prediction 10 25 - -
Gabi552g00001 701 FunFam Auxin response factor 309 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi552g00001 Gabi-Chr552 21877 28015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi552g00001 32 645 B3 DNA Binding Superfamily AT5G60450 42.902 1.54e-146 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi552g00001 B3 1.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi552g00001 K14486 - gmx:100808119 1111.67