Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi551g00006 ATGGAAGTACTTCCTTGTTCTGGTGTTCAGTATGCTGGGGAATCTGATTGCCCTCAGCAGAGTTCAGGAACAGCTTTTGTATGCCAGGGAGAACCTAATTGCCTTGAAAATGGTGAACAAGTTAAATTGGAAGATGATCGACTGAATGACTCACTACTTAAGATGGAAGGACCTCAGATAGAAAGGCAAGACCGAGTGCAACAGATTGGTTGTGAACTCTTGACTAATTCAGATTGCCAATGCAGTGGAGCTTCATGTTGTGATCGTCAAGTGGAAGACCAAAAGGAATCCTGTAGTTTCCATGATGTTGAAGATGATGAAATAAATGAACCTTTCTTAACCTGTGAGAACTCTCTCTCAATTGTGGATAATATTGAAAGTGAATCAGCAAATAACAGTAGGGAAGGGGAGTTGTCATTTTCTGAACCCACTTGGCTGGAGGGGGATGAATCTGTGGCTTTGTGGTGCAAGTGGAGAGGGAAGTGGCAAGCCGGCATCAAATGTGCAAGGGCAGACTGGCCATTATCAACTTTGAAAGCAAAACCAACTCATGACCGGAAAAAATATTTTGTCATATTTTTTCCTCACACAAGGAATTATTCTTGGGCTGATATGCTGCTTGTTCGATCAATTGATGAGTTTCCCCAGCCTATTGCATATAAAACTTATCAGGCAGGATTGAAAATGGTAAAAGACTTGACTGTTGCACGACGTTTCATAATGCAAAAGCTAGCCGTTGGCATGCTTAACATTGTGGATCAGCTTCATTCTAATGCTTTGATAGAAACTAGCCGGGATGTGATGGTTTGGAAGGAATTTGCTATGGAGGCTTCTCGATGTGATGGTTATTCTGATTTTGGAAGAATGCTTCTAAAGCTACAAAATAGCATAGTTCAGGACTACATAAATGCTGACTGGATAAAACATTCGTCTTACTCTTGGGCTGAACGATGCCAGAATGTAAATAGTGCTGAATCAGTAGAGTTGCTGAAGGAGGAATTATTTGATTCTATTTTGTGGAATGATGTCAGCACTCTCCGGGATGCACTGGTGCAACCAACATTATATTCTGAGTGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCCACATTTCCTTCCTATTCTAGCAACAAGGACACACAGCAGCAAACCGCTCATAGTTTGTACCAAGTAAGCCTTCAGGTTGGTAGTAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACTGGTTGAAACCAAGGATTCGGATCACTCTATTACCCTTGAGACTGACCTAGGTTTCTTTAAGAATCCGGACACATTGAGTACATTAGCAGCTGAGACTTCTAAACTGGAAGATGTTAGGGAGGTACCTGTAGCAACTGATTTACCTGGTAACTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCAGATTCTGAGATCTTGTGTAGCAATGGAATGGAATCAACACCTATGAATGAAATGTCTAGTCAAAAATTTGTAGAACCTGATACTAAGAATAGACAATGTATAGCTTATATTGAAGCCAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTATACTGTTGTGTGCATTTGTCCTCTCGTTTCTTGGGAAGCTCAGGAAAAGCCAGAAGACCTGTTTCAATTGATACTCCAATGTGTAAAGGTACAACTGTTCTTGGTACTAGATGTAAGCATCATGCCCTTCCTGGCTCTTCATTCTGTAAGAAACACCGGCCCCATGCTGAAACAGATGAGACCTCAAATTTAAGCCATAATCCACTAAAGAGGAAACATGAAGAAAATTACACTGGTTCAGAGGGAATGATCTGCAAAGACATGGTATTGGTAAATGTTGAAAATCCATTGCAAGTAAATCCAGTGTCAGCCATTGATGGTGATTCCTTCCATGGAAGAAGTAACTTAGATGAGAAGCCCATCCTTTTTGGCAATGATCATAATGCAATGGAGGCACTTCATTGTATAGGCTCTCCTCTCTATGATAACAAGGACCCTTGTCTGCAAGCTCCAAGTCGGTATTTCTTGTACTGTGAAAAGCATCTTCCAAGCTGGCTTAAACGTCCGAAAAATGGGAAGAGTAGAATAATATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGTTGCACATGGGAGCAAAAGGTGCATCTGCATCAAGCATGCGAGCTTTTTTACCGGCTATTCAAAAGCATTTTGTCGCTAAGAAACCCAGTTCCTAAGGAAGTTCAATTCCAGTGGGCTTTGACTGAAGCCTCAAAAGATATTAGTGTTGGAGAATTCCTTGCAAAGTTGGTACATAGTGAAAAGGAGAGAATCAAATTGATTTGGGGATTCAATGATGACATGGATGTATCCTCACTCATGGAAGGACAAACTCTCTTTCCTCCCATTGCTAATGACTGCATTGATAATGAAAATGCCATTAAGTGCAAGATCTGCTGTGCAGAATTTCCTGATGACCAAACACTTGGTAATCATTGGATGGACAATCATAAAAAGGAAGCACAATGGCTGTTCAGGGGTTATGCTTGTGCCATTTGTCTGGATTCTTTTACTAACAAGAAACTATTGGAAAACCATGTTCAGGAGAGACACCATGTGCAGTTTGTTGAACAGTGCATGCTTCTCCAATGTATTCCTTGTGGTAGTCATTTTGGAAATATGGAGCAATTATGGATGCATGTTCTATCAGTTCATCCTGATGAATTTAAGCCATCAGAAGCTCCTGAGCAGCAAACTTTGTCTACTTGCGAGGATTCTCTGGAAAAAATTGATCAGGGAAATTCAACTTCTTTGGAGAATAATTCTGAGAATCCAGTTGGTTTGCGGAAATTCATTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGGCGCCATCATCAAGCTGCTCATATGGGACGCAATCTAGTTAGCAGTCGCTCTGCAAAGAGGGGAGTTCATTCTTATGCTTATAGATTAAAATCTAGCAGACTTAGCCGTCCTAGATTTACAAAAGGTTTGGCAACAACATCATATAGGATCAGAAGTAAGGCTGATGCTAATTTAAAGAGATGCATTCAGGCAGCAAAGTCACTAGACATAGGGGAAACAACCATACAACCTCATGCAACTGAGATAACAAATATTGGTAAATTGGCAGAATATCAATGCTCAGCAGTTGCAAAGATTCTGTTTTCTGAGATTCAAAAGACTAAACCTCGGCCTAACAATTTTGATATTTTATCAATTGCTCGATCTGCTTGCTGCAGAGTTAGTCTTAAAGCCTCACTGGAGGAGAAATATGGAATTTTGCCTGAAAGGCTTTATTTGAAGGCAGCAAAACTTTGTAGTGAGCACAACATTCCAGTGAAATGGCACCAGGAGGGGTTCATTTGTCCCAAAGGTTGTAAGGTACCAAAGGACCAAATGCTGCTTTCTCCCCTAGCATCTCTTTCTAATGGTTTCCTTAGGCCAAAATTTGTAAATTTATTGGATCCTCCAAGTGATGAGTTGGAGGTGGATGAGTTTCACTACATCATCAGTTCACACCATTTAAATTTAGGGTCCGTAGTCTTATGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGAAATTCTAAATTCTCTCCGTAGGCATGGGTCCAATGAGCAAGATATAAATCTCTCTAGGCCGTGGGAGAGATTTACCTATGTTACGAAGCCAATGCTTGATCAATCACTTGGTCTTGATTATGAGAGTTTGCAACTGGGATGTGCTTGCTCATCTCCTACCTGCTATCCTGAAACATGTGATCATGTCTACCTTTTTGATAATGACTATGATGATGCAAAAGACATTTTTGGGAAACCAATCCGTGGTAGGTTCCCATATGATGAGAATGGCCGAATAATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAATCATATGTGCAGTTGCAACAAAACCTGTCCAAACAGAACATTGCAGAATGGAGTACGGGTTAAACTGGAAGTCTTTAAAACAGAGGAAAAGGGATGGGCGGTAAGGGCTGGAGAGGCTATCGTTCGAGGCACATTTGTGTGCGAGTACATTGGTGAGGTTTTAGATGAGCAGGAGGCACATAACAGGCGCAAAAGATATGGCAAAGAACATTGCAGTTATTTCTATGACATAGATTCTCATGTTAATGATATGAGTAGAATGATTGAAGGACAGGCTCGATATGTCATTGATGCTACTAGATATGGAAATGTTTCTAGGTTCATCAATAACAGCTGCTCGCCCAATCTTGTCAATTACCAAGTTCTTGTAGAGAGCATGGACTGTGAGCATGCACATATTGGTCTTTATGCGAGTCGAGATATTGCTTTGGGTGAAGAACTGACATATAATTATCAATATGAGCTTGAGCCTGGAGAAGGATTTCCTTGCCTTTGTGGATCTTTGAACTGCCGGGGACGCCTTTTCTAG 4503 0.4084 MEVLPCSGVQYAGESDCPQQSSGTAFVCQGEPNCLENGEQVKLEDDRLNDSLLKMEGPQIERQDRVQQIGCELLTNSDCQCSGASCCDRQVEDQKESCSFHDVEDDEINEPFLTCENSLSIVDNIESESANNSREGELSFSEPTWLEGDESVALWCKWRGKWQAGIKCARADWPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSIDEFPQPIAYKTYQAGLKMVKDLTVARRFIMQKLAVGMLNIVDQLHSNALIETSRDVMVWKEFAMEASRCDGYSDFGRMLLKLQNSIVQDYINADWIKHSSYSWAERCQNVNSAESVELLKEELFDSILWNDVSTLRDALVQPTLYSEWKTWKHDVMKWFSTFPSYSSNKDTQQQTAHSLYQVSLQVGSKRPKLEVRRADTHASLVETKDSDHSITLETDLGFFKNPDTLSTLAAETSKLEDVREVPVATDLPGNLTNKWNEIVVEAADSEILCSNGMESTPMNEMSSQKFVEPDTKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSGKARRPVSIDTPMCKGTTVLGTRCKHHALPGSSFCKKHRPHAETDETSNLSHNPLKRKHEENYTGSEGMICKDMVLVNVENPLQVNPVSAIDGDSFHGRSNLDEKPILFGNDHNAMEALHCIGSPLYDNKDPCLQAPSRYFLYCEKHLPSWLKRPKNGKSRIISKEVFTELLRDCCTWEQKVHLHQACELFYRLFKSILSLRNPVPKEVQFQWALTEASKDISVGEFLAKLVHSEKERIKLIWGFNDDMDVSSLMEGQTLFPPIANDCIDNENAIKCKICCAEFPDDQTLGNHWMDNHKKEAQWLFRGYACAICLDSFTNKKLLENHVQERHHVQFVEQCMLLQCIPCGSHFGNMEQLWMHVLSVHPDEFKPSEAPEQQTLSTCEDSLEKIDQGNSTSLENNSENPVGLRKFICRFCGLKFDLLPDLGRHHQAAHMGRNLVSSRSAKRGVHSYAYRLKSSRLSRPRFTKGLATTSYRIRSKADANLKRCIQAAKSLDIGETTIQPHATEITNIGKLAEYQCSAVAKILFSEIQKTKPRPNNFDILSIARSACCRVSLKASLEEKYGILPERLYLKAAKLCSEHNIPVKWHQEGFICPKGCKVPKDQMLLSPLASLSNGFLRPKFVNLLDPPSDELEVDEFHYIISSHHLNLGSVVLCDDISFGKESIPVICVVDQEILNSLRRHGSNEQDINLSRPWERFTYVTKPMLDQSLGLDYESLQLGCACSSPTCYPETCDHVYLFDNDYDDAKDIFGKPIRGRFPYDENGRIILEEGYLVYECNHMCSCNKTCPNRTLQNGVRVKLEVFKTEEKGWAVRAGEAIVRGTFVCEYIGEVLDEQEAHNRRKRYGKEHCSYFYDIDSHVNDMSRMIEGQARYVIDATRYGNVSRFINNSCSPNLVNYQVLVESMDCEHAHIGLYASRDIALGEELTYNYQYELEPGEGFPCLCGSLNCRGRLF 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi551g00006 1500 ProSitePatterns Zinc finger C2H2 type domain signature. 822 843 IPR013087 -
Gabi551g00006 1500 ProSitePatterns Zinc finger C2H2 type domain signature. 890 911 IPR013087 -
Gabi551g00006 1500 ProSiteProfiles Zinc finger C2H2 type domain profile. 957 985 IPR013087 -
Gabi551g00006 1500 SMART set_7 1345 1483 IPR001214 GO:0005515
Gabi551g00006 1500 Gene3D Classic Zinc Finger 851 938 - -
Gabi551g00006 1500 ProSiteProfiles SET domain profile. 1345 1477 IPR001214 GO:0005515
Gabi551g00006 1500 ProSiteProfiles Pre-SET domain profile. 1266 1342 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi551g00006 1500 Pfam Pre-SET motif 1205 1337 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi551g00006 1500 SMART PostSET_3 1484 1500 IPR003616 -
Gabi551g00006 1500 SUPERFAMILY SET domain 1193 1490 IPR046341 -
Gabi551g00006 1500 ProSiteProfiles Zinc finger C2H2 type domain profile. 888 916 IPR013087 -
Gabi551g00006 1500 SMART preset_2 1202 1329 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi551g00006 1500 ProSiteProfiles Post-SET domain profile. 1484 1500 IPR003616 -
Gabi551g00006 1500 Pfam Zinc finger C2H2-type, 3 repeats 856 981 IPR040689 -
Gabi551g00006 1500 Gene3D SET domain 1195 1500 IPR046341 -
Gabi551g00006 1500 Pfam SET domain 1356 1476 IPR001214 GO:0005515
Gabi551g00006 1500 ProSitePatterns Zinc finger C2H2 type domain signature. 959 980 IPR013087 -
Gabi551g00006 1500 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1500 - -
Gabi551g00006 1500 SMART c2h2final6 854 877 IPR013087 -
Gabi551g00006 1500 SMART c2h2final6 820 843 IPR013087 -
Gabi551g00006 1500 SMART c2h2final6 888 911 IPR013087 -
Gabi551g00006 1500 SMART c2h2final6 957 980 IPR013087 -
Gabi551g00006 1500 ProSiteProfiles Zinc finger C2H2 type domain profile. 854 877 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi551g00006 Gabi-Chr551 125962 138355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi551g00006 135 1499 C2H2 Transcription Factor Family AT2G23740 51.113 0.0 1360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi551g00006 Pre-SET 3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi551g00006 - - gmx:100808203 2488.76