Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi550g00007 ATGGCTGATTCACTATCAGTTAATGTTGATTCTCCACCTAAGCTCGAATTGTCTGCCGAACAAGCACATAGAACTATCCATGAGGCCGAATACCCTCCTCCATCTAACATCCAAAAGGCAATTGCTGAGTTCGTGGGTACATACATTCTAATATTCGCGGGCTGTGGGGCTGCTCTTGTTAACGAGAGGTTGCCACTTACAATAGTAGGCATAGCAATCGTTTCAGGTCTAGCTCTGACTGTGGCTATATATTCTGTTGGTCATGTCTCTGGTGGCCATTTCAATCCTGCAGTGACAATTGCCTTGGCTGCTGTCCGAAAAATTCAATTGAGACTTGTGCCTACTTATGTGTTGTGCCAGTTGATGGGTGCTACACTGGCCAGCCTCACCCTCAAATTGTTGTATCATGACAAGGTGGATTTTGGAGTAACAGTGACTCAATACTTGAGTTCAACTTCTGATCTTGAAGCAATGATGTGGGAATCCATAATCACTTCCATACTGATGCTCACTATTTGCGGTGTTGCCACTGATCCCAGAGGGAGCAAAGAACTCGCTGGAGTTGCAATTGGAATTTCAGTTCTGATTAACGTCATCATTGCCGGGCCTATTACTGGAGCTTCCATGAACCCTGCAAGGAGTTTGGGACCTGCTATCGTGTCTGGTGATTACAAAAACATTTGGGTTTATATCATAGGCCCTACTCTGGGAGCAATTTTAGCAAGTCTACTTTACAGATTCCTAGAAGTAACCAAACCAGCAGAACCTGAAGACCGTACCCGAACCATGTCACACGAGCAATCATAA 807 0.4486 MADSLSVNVDSPPKLELSAEQAHRTIHEAEYPPPSNIQKAIAEFVGTYILIFAGCGAALVNERLPLTIVGIAIVSGLALTVAIYSVGHVSGGHFNPAVTIALAAVRKIQLRLVPTYVLCQLMGATLASLTLKLLYHDKVDFGVTVTQYLSSTSDLEAMMWESIITSILMLTICGVATDPRGSKELAGVAIGISVLINVIIAGPITGASMNPARSLGPAIVSGDYKNIWVYIIGPTLGAILASLLYRFLEVTKPAEPEDRTRTMSHEQS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi550g00007 268 SUPERFAMILY Aquaporin-like 34 253 IPR023271 -
Gabi550g00007 268 Pfam Major intrinsic protein 35 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 Gene3D Glycerol uptake facilitator protein. 5 260 IPR023271 -
Gabi550g00007 268 NCBIfam MIP family channel protein 42 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 PANTHER AQUAPORIN NIP2-1 29 253 IPR034294 -
Gabi550g00007 268 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 CDD MIP 38 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi550g00007 268 ProSitePatterns MIP family signature. 93 101 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi550g00007 Gabi-Chr550 82899 84462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi550g00007 38 253 Major Intrinsic Protein MIP AT5G37820 51.131 1.05e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi550g00007 K09874 - gmx:100798380 410.609