Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi550g00004 ATGGGAAGGTTTCCATGCTGCGATGAAAATGGCCTTAAGAAGGGACCCTGGACTCCTGAAGAAGATCAAAAGCTAGTTGATTACATTCAGAAACACGGCCATGGAAGTTGGAGAGCTCTCCCTAAGTTAGCAGGTCTTAATAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACCAACTATTTAAGACCTGACATCAAGAGGGGGAAATTTTCTCAAGAAGAGGAGCAGACAATTCTGCATCTCCATTCCATTCTTGGAAACAAATGGTCAGCAATTGCAACCCACCTTCCTGGCAGGACCGATAATGAGATCAAGAATTTCTGGAATACTCACTTAAAGAAAAAACTGATTCAGATGGGTTTTGATCCAATGACACACCAGCCAAGAACTGATCTATTTTCCAGCTTGCCATATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAATCTTTGGATGAACAGGCTTTCAGGTTACATGCAGAGGCCGTTCAGCTAGCAAAGCTTCAAAATCTTCACTATTTACTCCAATCTACAAATTCCTTAGACACCAACTATTATGACCAAAATGCCATCACAAACATGGAAGCTTTCAATTTGTTAAATTCAAGTACTAATGTCAAAGACAACCTAGTAATTATGGACTGTCCACAACTGAATAGTCCAGCCTCATTTTCTAATGGGATTTCTAGCTCCCAACTGCTCCCCCACTCAAGCATGTTATCTCACTTTCTAGACCCAAAAGTCTCTTTCAGCTCCCAATCTGGTTTGAATAGTGAGCAGGGTCAAGGTACTACTGACTTTGAAATGATAGGTCAAGGGGACCACACAGTTGATGGCTCTCCCTGGATAATAACATCATCTCCTGCTCCATCTATTCCCCTAAATGTGACAGGGACCTCAACTAGCAATCCAGGAGATGCCAGCAGTAGCACTTCTAGCCATGGAGGAACCTCTTCTTATTGGCCTGAACTATTTTTTGAGGATCCCATTATGCATGAGCTATCGTAA 1017 0.4258 MGRFPCCDENGLKKGPWTPEEDQKLVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLFSSLPYLLALANMTDLMDHQSLDEQAFRLHAEAVQLAKLQNLHYLLQSTNSLDTNYYDQNAITNMEAFNLLNSSTNVKDNLVIMDCPQLNSPASFSNGISSSQLLPHSSMLSHFLDPKVSFSSQSGLNSEQGQGTTDFEMIGQGDHTVDGSPWIITSSPAPSIPLNVTGTSTSNPGDASSSTSSHGGTSSYWPELFFEDPIMHELS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi550g00004 338 CDD SANT 69 112 IPR001005 -
Gabi550g00004 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi550g00004 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi550g00004 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Gabi550g00004 338 CDD SANT 16 61 IPR001005 -
Gabi550g00004 338 MobiDBLite consensus disorder prediction 292 322 - -
Gabi550g00004 338 Gene3D - 13 66 - -
Gabi550g00004 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi550g00004 338 SMART sant 13 63 IPR001005 -
Gabi550g00004 338 SMART sant 66 114 IPR001005 -
Gabi550g00004 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi550g00004 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi550g00004 338 Gene3D - 69 116 - -
Gabi550g00004 338 MobiDBLite consensus disorder prediction 292 323 - -
Gabi550g00004 338 FunFam MYB-related transcription factor 13 66 - -
Gabi550g00004 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi550g00004 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi550g00004 338 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi550g00004 Gabi-Chr550 59621 61153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi550g00004 1 338 MYB Transcription Factor Family AT1G34670 53.298 1.32e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi550g00004 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi550g00004 K09422 - gmx:100811162 507.679