Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi54g00015 ATGGCAATCATGGAAAAGATATTGTTGACGCTGTTATTGTTGTCATCAGTTTTATCAATAGCCTCAGCAAGAAGAAGATCTTCTTCGAGCTGCAACATAGACTGGTGGTGCAACCAAACACCACACCCTGAGCCATGCAAATACAACATGAGACAGAGCCACAACCGTTACACATTCAAACACAAGTCCGAATTCCGTACAATTCTGGTTGAGTTGGCCTTAGATAGAGCGATTATCATGCACAAGGAAGCACACGATCTCAAGCAAAACCCGGGGAACAAGAAGCAGAAATCCGTATTGGATGATTGTTTGAAGCTCTATGATAACACCATCTTCCAGCTAAATCGTACCTTTCAAGGCCTTCATGTGAAGAGAAGCTTTTCACTATTTGATGCACAAACATGGCTTAGCACTTCTCTTACAAACATCGAAACCTGTCGAAACGGGGCATTAGACTTAAGCGTTCCAGATTGCATCGCGTCCCCTGCGAGAACCAATGTGACAGCCATTATAAGCAATAGCTTATCCGTGAATTGGGCTTTCGTGAAACACGAAGCAGTTCCTTATACTACAGAAGATACGGAATATGGTTATCCAAGTTGGTTTTCCACGAATGAGAGGAAGCTGTTGCAGTCTTCTTCAATAAAGGCCAATCTCGTGGTAGCCAAAGATGGTTCAGGGCATTTCAAGACAATCCAAGCTGCTATTAATGCAGCGGCAAGGAGAAGATTCAAGACGAGGTTTGTTATACATGTAAAGAGAGGAGTTTACAGAGAGAATATTGAGGTTGACATGACCAACGACAACATCATGTTGGTTGGTGATAGCATGAGAACCACCATAATAACAAGTGGCAGAAGCGTTCAAGGTGGCTTTACAACCTTTAGCTCTGCAACAGCAGGAATTGATGGTCTTCACTTCATAGCACGTGACATTACCTTTCGAAACACCGCGGGTCCTGCGAAGGGTCAAGCGGTGGCACTTCGATCAGCATCTGATCTTTCTGTGTTCTACCGGTGTTCCATCGAAGGTTACCAAGACACGCTCATGGTTCACGCACAGCGACAATTTTACCGAGGATGCTACATTTATGGAACCGTTGACTTCATATTTGGGAATGCTGCAGTTGTTTTTCAAAACTGTGTGATTCTTGTGAGAAGGCCTGTAAATGGTCAAGGAAACATGATCACTGCTCAAGGTCGAGATGATCCATTTCAAAACACAGGAATTTCAATTCACAATTCTCAGATAAAGGCTGCTCCAGATCTCAAGCCAGTTGTTTCGAACTTCAACACTTTCCTGGGCCGGCCTTGGCAAAAATATTCAAGAGTGGTTATCATGAAATCGTTCATGGATAGCTTGGTGAACCCAACGGGTTGGTCCCCATGGGATGGTACTACTTTTGCTCAGAGTACTCTCTATTATGGAGAGTACAAGAATTTTGGGCCTGGTTCATCCACTAGAAACAGGGTTCGATGGCCTGGTTTTCATGTTATAACCAGCCCAACTGATGCGTCACTCTTCACCGTTGCTAACCTCCTTGCTGGCCGCACATGGTTGCCTTCCACTGGTGTCCCATTCACTTCTGGCCTTTAA 1596 0.4449 MAIMEKILLTLLLLSSVLSIASARRRSSSSCNIDWWCNQTPHPEPCKYNMRQSHNRYTFKHKSEFRTILVELALDRAIIMHKEAHDLKQNPGNKKQKSVLDDCLKLYDNTIFQLNRTFQGLHVKRSFSLFDAQTWLSTSLTNIETCRNGALDLSVPDCIASPARTNVTAIISNSLSVNWAFVKHEAVPYTTEDTEYGYPSWFSTNERKLLQSSSIKANLVVAKDGSGHFKTIQAAINAAARRRFKTRFVIHVKRGVYRENIEVDMTNDNIMLVGDSMRTTIITSGRSVQGGFTTFSSATAGIDGLHFIARDITFRNTAGPAKGQAVALRSASDLSVFYRCSIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRRPVNGQGNMITAQGRDDPFQNTGISIHNSQIKAAPDLKPVVSNFNTFLGRPWQKYSRVVIMKSFMDSLVNPTGWSPWDGTTFAQSTLYYGEYKNFGPGSSTRNRVRWPGFHVITSPTDASLFTVANLLAGRTWLPSTGVPFTSGL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi54g00015 531 SUPERFAMILY Pectin lyase-like 214 530 IPR011050 -
Gabi54g00015 531 PANTHER PECTINESTERASE 17 521 - -
Gabi54g00015 531 Pfam Plant invertase/pectin methylesterase inhibitor 33 176 IPR006501 GO:0004857
Gabi54g00015 531 Pfam Pectinesterase 218 516 IPR000070 GO:0030599|GO:0042545
Gabi54g00015 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 178 IPR035513 -
Gabi54g00015 531 Gene3D - 211 531 IPR012334 -
Gabi54g00015 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 180 IPR035513 -
Gabi54g00015 531 FunFam Pectinesterase 212 531 - -
Gabi54g00015 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Gabi54g00015 531 NCBIfam pectinesterase inhibitor domain 7 176 IPR006501 GO:0004857
Gabi54g00015 531 CDD PMEI-like_3 35 178 - -
Gabi54g00015 531 SMART PMEI_2 28 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi54g00015 Gabi-Chr54 127545 129743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi54g00015 29 531 Carbohydrate Esterase AT5G51500 60.735 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi54g00015 K01051 - gmx:100807908 818.535