Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi54g00006 ATGTCGTCGACCCCTCCGCCACCGCATTCTCCAGAACCACCGTCTCCGAAACCCGACCAGGGCATTCCCGCTCCAGCGACACCGTCACGGCTCGGCAGAGCCAAGCTCCAGAAAATTCCCCCAATTCCAATTCGACGAACAGCGGCATCAACAGAGGAAGGCGAGTTAGCCGATGAGGAGAAAAGCGAAGAGAAGGAGGAGGTAGAGGTAGAAGAAGGTGAACGCGCTGTTTCTTCCATCTTGCTTGCGTCGTCGTTAGGGCTCAATCACATTCGGACACGCTCTTCATCTTCGCCTCTTCGTTATTCATCCTCGGTTGGCGCTTCTTCCTTCTTGGGAAAAGATGCTGTTCGGACTAATGACAATGACGCCAGACCTAGATCCAAGCCTTACCATCCAAAGGACCTAGGGGAAAAAGCTCATTGGAGTCAATCTAAATCGTTGAGAACTCATTCATCACTCCTTCCTGTGCTAGAGGGTAATCATGCAGCTTTCGCCAAAGAAATACAATCCCCACGTTTTCAGGAAATCCTGCGACTAACAAGTGGCCGCAAAAAGAGAAACCCTGATATTATTAAGAGCTTTTCTCATGAACTCAACTCCAAAGGAGTTAAACCTTTTCCGCTCTGGAAACATCGTACCTTTGGGCATATGGAGGAAGTCATGGTTGCAGTTAAAGCAAAATTTGAAAAGTTGAAGGAAGAAGTTGATTCTGACTTGGGTGCTTTTGCTGGAGACTTGGTCGGTACTCTTGAAAAAATTTCAGGGTCTAATCGTGAATGGAAAGAAAAAGAGAGGCTGGAGGATCTGTTGGTTGTTGCTCGACAATGTGAAAAGATGTCACCTACGGAGTTTTGGATCAAATGCGAAACTATTGTTCAAAATCTGGATGACAAGCGTCAAGAATTACCAGTGGGGATCCTCAAGCAAGCTCATACACGCCTACTGTTTATTCTCACTCGGTGCACGCGCCTAGTGCAATTCCAGAAGGAAAGTGGCTATGAACAAGATCACATTCTGGGTCTTCACCAACTCAGCGATCTTGGAGTATATTCAGAGCAAATTTTGAAGGCTTCAGAGCAGAAATCCAGTATCCCAACTTGTGGACATGAAATGGCTGAGAAGCAGTCAAAAAAGTCTCATGGAAAAGAGCAAGACAAATTGGTAATAAAACAAAGTCAAGTTGAACAACATGCAAGTGTTGCGATTGACAATGTGGAGCTTACTACAGCCAAAAGTGTTGACTCGACCCCCGGCAGCTATAGGATGTCTTCTTGGAGAAAGCTTCCATCTGCTGCTGAGAAAAAGCGCAAAGGTCAAGATGCTGTAGATTTCCCATCCAAAGGTGATTTGGATCAGATGCTAGTCAAAGATGAAAATGCTGAAAGTTTGGATACTTTGTCATGTCATCCTGAACACTCACAGTCATCGTCAAGAGCGCGAAAGGTTTCTTGGGGATTCTGGGGAGATCAACAAAATCTAACATATGAGGATTCGATGATCTGCAGGATTTGTGAGGTTGAAATACCAATTGTACATGTCGAGGAGCATTCTCGCATATGCACAATTGCTGATCGATGTGATTTGATAGGCTTAACTGCAAATGACCGACTGGAAAGAGTTTCTGAAACTATTGAAAGGATACTGGAGTTCTGGACACCAAAAAGCACACCAAAAAGCACTGATACTCCTGGAGAAGGCTTCGAGGTTGTTACAGTGTCAACATCAAGTTTGCACGAAGAGTTCAATGAATTATCTCTAGAAAAAAATAACTTGACTTGTAGATGCTCTGAAGACATGCTTGACACTACTCCTGAAGCTGACAATACTTTTGTTATGGGTGATCTGAACCTTTCACCTGAAATATCATATGAAGCACGGACCTGCTTGAAACCTGATCTTGGCACAAAAGTATCTTCAGCTGGAAGCTTGACACCGAGATCACCGTTGTTAACACCACGAACCAGTCAGATAGAAATGTTATTAAGTGGACGAAGAACAATGTCTGAACTTGAGAGTTATGACCAGATACACAAGCTAGTTGAAATAGCTCGTGCTGTTGCAAATGTGAACAACTGTGACTACAGTGCTTTGGAGTATATGCTTGATCGCTTAGAAGACCTGAAATACGCAATTCAGGACAGAAAGGTGGATGCACTTATTGTGGAGACTTTTGGACGACGTATAGAGAAACTTTTGCAGGAGAAATATGTATCTCTTTGTGGGCAGATAGAAGATGAAAAGGTAGACTCATCAAATAGCATTGCTGATGAAGAGAGTTCAGTGGAAGATGATACGGTCCGTAGTCTTCGTGCTAGCCCAATTAATCCTTGTTCTAAGGACCGAACCTCTATCGAAGACTTTGAAATAATAAAACCAATAAGCAGGGGAGCATTTGGACGAGTTTTTCTTGCCCGAAAAAGAGCAACGGGAGATTTATTTGCTATAAAGGTTCTGAAAAAGGCAGATATGATCCGTAAAAATGCTGTTCAAAGTATTTTGGCTGAGCGAGACATCCTTATATCTGTTCGAAACCCTTTCGTGGTCCGATTTTTCTACTCTTTCACATGTAGAGAAAATCTTTATCTGGTTATGGAGTATTTAAATGGTGGAGATCTTTATTCGCTGTTGAGAAATCTAGGTTGCCTAGATGAAGATATGGCTCGTGTATATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCCTTAAATGTGATTCACAGAGACTTGAAGCCAGATAACTTGCTGATTGGCCAAGATGGTCACATCAAGTTGACAGATTTTGGGCTCTCTAGGGTTGGTCTTATCAACAGCACAGAGGATTTATCAGCACCATCATTTTCCACTAATGGTTTCCTAGGAGATGATGAACCAAAACCTCGACATTCTTCGAAAAGGGAAGAACGTCAAAAGCAATCAGTAGTTGGCACCCCAGATTATTTGGCACCTGAGATACTTCTTGGCATGGGACATGGTGCAACCGCAGATTGGTGGTCCGTGGGTGTCATACTTTATGAGCTTCTTGTGGGTATTCCACCATTTAATGCAGAACATCCACTGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCCAAGATTCCTGAGGAGATAAGCTTTGAAGCATATGATTTGATGAATAAATTATTGAACGAAAATCCAGTTCAAAGATTAGGTGCAACGGGAGCTACGGAGGTTAAACGCCACCCTTTCTTCAAGGATATTAATTGGGATACTCTAGCAAGGCAGAAGGCTATGTTCATACCATCTGCTGAAGCTCTTGATACAAGTTATTTTATGAGCCGGTACATTTGGAATCCAGAGGATGAACATTGTGCAGGTGGTAGTGATTTTGATGACATTACTGAAACATGCAGCAGTGGTTCAGGCAGCGATTTATTAGATGAAGAGGGTGATGAATGTGGTAGTTTAGCAGACTTCAGTGGTCCAGCTCTTGAGGTGCAGTATTCATTTAGTAATTTCTCATTTAAGAACTTGTCTCAGCTAGCATCTATCAATTATGATCTGGTTATTAAGAACTCGAAGGAATCACCCAATGACGCCAACCCATCTGTTTCATGA 3594 0.4271 MSSTPPPPHSPEPPSPKPDQGIPAPATPSRLGRAKLQKIPPIPIRRTAASTEEGELADEEKSEEKEEVEVEEGERAVSSILLASSLGLNHIRTRSSSSPLRYSSSVGASSFLGKDAVRTNDNDARPRSKPYHPKDLGEKAHWSQSKSLRTHSSLLPVLEGNHAAFAKEIQSPRFQEILRLTSGRKKRNPDIIKSFSHELNSKGVKPFPLWKHRTFGHMEEVMVAVKAKFEKLKEEVDSDLGAFAGDLVGTLEKISGSNREWKEKERLEDLLVVARQCEKMSPTEFWIKCETIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKESGYEQDHILGLHQLSDLGVYSEQILKASEQKSSIPTCGHEMAEKQSKKSHGKEQDKLVIKQSQVEQHASVAIDNVELTTAKSVDSTPGSYRMSSWRKLPSAAEKKRKGQDAVDFPSKGDLDQMLVKDENAESLDTLSCHPEHSQSSSRARKVSWGFWGDQQNLTYEDSMICRICEVEIPIVHVEEHSRICTIADRCDLIGLTANDRLERVSETIERILEFWTPKSTPKSTDTPGEGFEVVTVSTSSLHEEFNELSLEKNNLTCRCSEDMLDTTPEADNTFVMGDLNLSPEISYEARTCLKPDLGTKVSSAGSLTPRSPLLTPRTSQIEMLLSGRRTMSELESYDQIHKLVEIARAVANVNNCDYSALEYMLDRLEDLKYAIQDRKVDALIVETFGRRIEKLLQEKYVSLCGQIEDEKVDSSNSIADEESSVEDDTVRSLRASPINPCSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKADMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDMARVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSRVGLINSTEDLSAPSFSTNGFLGDDEPKPRHSSKREERQKQSVVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGIPPFNAEHPLQIFDNIINRDIQWPKIPEEISFEAYDLMNKLLNENPVQRLGATGATEVKRHPFFKDINWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCAGGSDFDDITETCSSGSGSDLLDEEGDECGSLADFSGPALEVQYSFSNFSFKNLSQLASINYDLVIKNSKESPNDANPSVS 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 957 975 - -
Gabi54g00006 1197 Gene3D Transferase(Phosphotransferase) domain 1 872 1094 - -
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 429 449 - -
Gabi54g00006 1197 CDD STKc_MAST_like 794 1081 - -
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 949 976 - -
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 1 23 - -
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 56 70 - -
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 113 145 - -
Gabi54g00006 1197 PANTHER SERINE/THREONINE-PROTEIN KINASE 475 1151 - -
Gabi54g00006 1197 ProSiteProfiles Protein kinase domain profile. 788 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi54g00006 1197 FunFam probable serine/threonine protein kinase IREH1 786 875 - -
Gabi54g00006 1197 ProSiteProfiles AGC-kinase C-terminal domain profile. 1077 1177 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi54g00006 1197 Gene3D Phosphorylase Kinase; domain 1 786 1103 - -
Gabi54g00006 1197 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 372 388 - -
Gabi54g00006 1197 Coils Coil 56 76 - -
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 413 449 - -
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 362 388 - -
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 118 145 - -
Gabi54g00006 1197 Pfam Protein kinase domain 788 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi54g00006 1197 SMART serkin_6 788 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi54g00006 1197 MobiDBLite consensus disorder prediction 1 75 - -
Gabi54g00006 1197 SUPERFAMILY Protein kinase-like (PK-like) 785 1102 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi54g00006 Gabi-Chr54 77186 86934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi54g00006 36 1196 AGC Kinase Gene Family AT5G62310 63.983 0.0 1462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Gabi54g00006 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi54g00006 - - gmx:100817975 1956.8