Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi546g00004 ATGGTTCTCAACGAAATCTTAAGAAGAGACCATTGTTCACGTAAGAGAGTTACGGAGAAGATGTCAAACAAGGATTTGAAGGACAAGTACAAGAACCACAAGGAATCATCATCATGGGCATGGTCAAAGTGTTTTCATCATGGTAGTGGAAGATTTACTGCTATGGGAAATGCACAACAATGGAATAATGTTGTTGACTTGTCTAATCTGTTCATTGGGCACAAGTTTTCTCAAGGTGCTTATAGTAAGCTTCATCGTGGTATATATAATAAGGAACCTGTTGCTGTTAAAATTGTGAGTGTACCTGAGGATGAAGCAATGGGAAACTTGGCTTCAAAGTTAAAGACACAGTTCATCAGAGAAGTCACGTTTTTATCTCATCTCCACCATCAAAATGTTATAAAGTTCATAGGAGCATGCAAAGACACAGATGTTTATTGCATTCTCACGGAGTATCTATACAATGGTTCTTTAAGGGCATATTTGAACAAGTTAGAGTCCAAACCAATTTGTGTGAAGGAGGTAATAGGTTTTGCTTTGGATATTGCACGTGGAATGGAGTATATACATGCACAAGGTATCATTCATAGAGACCTTAAACCGGAGAATGTGCTTGTTGATGGGGACTTACATCTCAAAATTGCTGATTTTGGGGCTTCATGTGAGGCTTCAAAGTGTGACAACTCATTGAGTGGTACCTACCGTTGGATGGCACCAGAGATGATCAAAGGCAAACGTTATGGGAGAAAGGTTGATGTCTACAGTTTTGGGCTTATTCTTTGGGAAATGGTGAGTGGCAAAATGCCATTTGAGGATATAACTCCAATACAGGTTGCTATTGCTGTGAAAAATAAGGATTTAAGGCCTGTTATTCCTTCAACATGTCCACCTGTTATTAGAAATTTGATTCAACAATGTTGGGCCTCAAAACCAGAGAAGAGGCCCGAGTTCTGCAAGATTGTTCAGGTTTTGAAGCAGTTTGATCAATCTTTATTAGCCACTGATGGAACCCTGAATCTGATGCAAAAACCCTGTAGCCAAGATCATCATCATCTTAAGAAAGATTTTCTTCATTGGATTCAAAAGATTGGCCATGTGCATTGA 1104 0.3904 MVLNEILRRDHCSRKRVTEKMSNKDLKDKYKNHKESSSWAWSKCFHHGSGRFTAMGNAQQWNNVVDLSNLFIGHKFSQGAYSKLHRGIYNKEPVAVKIVSVPEDEAMGNLASKLKTQFIREVTFLSHLHHQNVIKFIGACKDTDVYCILTEYLYNGSLRAYLNKLESKPICVKEVIGFALDIARGMEYIHAQGIIHRDLKPENVLVDGDLHLKIADFGASCEASKCDNSLSGTYRWMAPEMIKGKRYGRKVDVYSFGLILWEMVSGKMPFEDITPIQVAIAVKNKDLRPVIPSTCPPVIRNLIQQCWASKPEKRPEFCKIVQVLKQFDQSLLATDGTLNLMQKPCSQDHHHLKKDFLHWIQKIGHVH 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi546g00004 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Gabi546g00004 367 Gene3D Phosphorylase Kinase; domain 1 57 153 - -
Gabi546g00004 367 FunFam Kinase suppressor of Ras 1 58 153 - -
Gabi546g00004 367 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 331 - -
Gabi546g00004 367 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi546g00004 367 PRINTS Tyrosine kinase catalytic domain signature 150 163 IPR001245 GO:0004672|GO:0006468
Gabi546g00004 367 PRINTS Tyrosine kinase catalytic domain signature 295 317 IPR001245 GO:0004672|GO:0006468
Gabi546g00004 367 PRINTS Tyrosine kinase catalytic domain signature 251 273 IPR001245 GO:0004672|GO:0006468
Gabi546g00004 367 PRINTS Tyrosine kinase catalytic domain signature 188 206 IPR001245 GO:0004672|GO:0006468
Gabi546g00004 367 PRINTS Tyrosine kinase catalytic domain signature 232 242 IPR001245 GO:0004672|GO:0006468
Gabi546g00004 367 Pfam Protein tyrosine and serine/threonine kinase 72 324 IPR001245 GO:0004672|GO:0006468
Gabi546g00004 367 CDD STKc_MAP3K-like 78 324 - -
Gabi546g00004 367 SMART serkin_6 70 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi546g00004 367 Gene3D Transferase(Phosphotransferase) domain 1 154 360 - -
Gabi546g00004 367 SUPERFAMILY Protein kinase-like (PK-like) 62 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi546g00004 Gabi-Chr546 138337 139440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi546g00004 26 367 MAP Kinase Kinase Kinase AT5G58950 52.616 5.82e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi546g00004 PK_Tyr_Ser-Thr 6.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi546g00004 - - gmx:100782673 441.81