Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi546g00003 ATGAACATTATCATTTCCTCTCAGTTTTTCCTCCTTTCACTTCTTTCCATTTGCTTCACATTGCTTGCTTTTGGAGCCTCCAATTTGCCACAGGATGAAGTGCAAGCGTTGAAAGATATAGGTAAAACACTTGGTAAGAAGGATTGGGACTTCAACATAGATCCATGCAACTGGAGCATGACAGAAACCATGATATATGGGGAAGAAAATAAGGTCTCTTGCAATTGCTCTATGCTCAATGACAACTTCTGCCATGTTGTTAAAATAGTTCTGAAATCACAAAATCTTCAAGGCACGCTCCCACCAGAACTGATCAGGTTGCCTTACCTCCAAGAAATTGACCTTACCCGTAACTACCTTAGTGGTACAATTCCTAGAGAATGGGGCTCCTCAAAACTTCAACAAATTTCACTTCTTGGTAACCGATTAACTGGTCCAATCCCAACTGAGCTAGCAAACATAACCAACCTCAAACGTTTGATCCTCGAATTCAATCAATTTTATGGAAATCTTCCTCCAGAACTTGGAAATCTGTCTCACATTGAGCAACTACATCTAAGCTCCAACAACTTTACTGGAGAATTGCCTGGAACTCTTGCTAGGCTTACTACATTGAAGGAATTCCGAATTAGTGACAATCAGTTCTCTGGCAACATACCTGATTTTATTCAAAGATGGACAAGTCTGGAAGAACTAGTGATTCAAGGGAGTGGTTTAAGTGGTCCAATTCCTTCTGGGATTTCGTTTCTGCAAAAGTTAATCGACTTGAGGATTAGTGACTTGAATGGAACTGATTCTACTTTTCCTAGAGTTGATAATATGAAAGGACTGAAAACATTGATATTAAGGAGTTGCAATATTAATGACACACTTCCTCATTATCTTGCAAACTTGACACTTTTGCAAGTCTTAGACCTTAGCTACAACAAATTAAGTGAAGACTTTCCAAGAAATATTAAAGATTTAACAGGAGCAACCTACATATATTTAACAGGAAACTTTCTTTCTGGACCAGTGCCTGAGTTGACAAAGAGCACTGATAGAAATTTAGATCTTTCATATAACAACTTCACTGTTGAAAACCAAGAACCAGAGACATGTTATGCACAAAATGTGAACTTGTTTGCAAGCTTTCGAAGGAATAACTCAGGACCAGTTTCTTGCAACAGCAGCACTAGAATCTGTACTAAAACCGTTAAATCCCTACATATAAATTGTGGTGGAAAACAGACTACCATTGGAGGTATAACATATGAAGAAGATATTGATCCAGCTGGACCAGCAGTATATAAAGAGAGTAGAGGCAACTGGGCAATTAGCAACACCGGCCACTTCTTGGATAATAATACTTCACCATTTCTTCCCTATACCTCAGAAAATCAAACTAGGCTTTATATGACTGATACTGAACTATATAAGAATGCACGTATTTCCCCCGTATCTTTGACTTACTATGGATTTTGCCTGGAAAATGGGGACTACACAGTAAAGCTCCGCTTTGCTGAGATAATGTTCACTGATGATAACACATATAGTAGCTTAGGGAGGCGTCTATTTGATGTCTACATTCAGGGAAAGCGGGTACTGAAGGATTTCAACATTGCAAATGAAGCACAAGGAGTTGGCAAGGAACTTAAAAAACAATTTCCTGCTCATGTGAGTAGTAATGACTTAGAGATCCGCTTCTATTGGGCTGGCAAAGGGACAACATATATCCCATATAAATCAATAAATGGTCCTCTTATATCAGCTATATCTGTCAAGTATATATCTGTCAACTGTGGTGAGTTGTCTTCTAACATGTCTGCAGGGGCTATTGTTGCAATTGTGGCTGCAGCAGTGGTTGCTGTCATCTTGATTGTTGTTGGCATGCTTTGGTGGAGAGGTTATCTAGGGAAAAAGCATTTACTAGTGAGAGAGTTGAAGGATTTAGATTTGCAAACTGGTTTATTTACCTTACATCAAATCAAAGCAGCAACAAATAATTTTGATATTTCCAATAAGATTGGAGAAGGAGGCTTTGGTCCTGTTTATAAGGGCATTCTGTCTAATGGCACAGTAATAGCAGTCAAACAGCTTTCACCTAAATCAGAGCAAGGAAAACGTGAGTTCATAAATGAGATAGGCATGATCTCAGCTTTGCAACACCCTTGTCTTGTTAAACTCTATGGCTGTTGTGTTGAGGGAGATCAGTTGTTGTTAGTATATGAGTACATGGAAAACAATAGCCTTGCAAAAGCTTTATTCGGCCCAGAAGAATGCCGTTTAAAGTTGAACTGGCCAACAAGGAAGAAGATTTGTGTCGGTATTGCTAGAGGTTTAGCTTTCTTGCATGAAGAATCAAAACTGAAAGTTGTTCACAGAGACTTTAAGGCTGCTAATGTGTTGCTTGACGAAGACTTGAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTGAATGAGGAGGATAATACTCACATAAGCACCAGAATAGCTGGGACCTATGGATATATGGCTCCTGAGTATGCCATGCATGGCTATTTGACCGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGTTTTGGAGATTGTAAGTGGAACAAGAAACACTCTTCACCGGTCAAAGGAAGAAGCAGTCTATCTTCTTGATTGGGCACGTCTATTGGAAGAGAAAGGTAATCTAATGGAGCTAGTTGATAAAAGGTTGGTTTCAGATTTCAATGAAGAGGAGGTAATGATGATAGTCAAAGTGGCACTCCTATGCACCAATGCCACTTCAAACCTTAGGCCAACCATGTCTTCAGTGCTAAGCATACTTGAAGGCATAACAGTGGTTCCAGAATTTGTTTCACATCAAAGTGAGGTAATGGATGAGATGAGGTTGGAGGCATTGAGAAATTTTTACAGTAAGATGGAAGAAAATAAAATAAGAGAGGCACAAAGTTTGAGCTTGTCAATTAATGTGCCATGGACTGCTTCATCTTCATCAGCTGCAAACCTCAATGATGTCCACCGTAATTCTTCCTATTGGGAGGGAAAGAAATTAATGAAGTTTGTATAA 3045 0.3905 MNIIISSQFFLLSLLSICFTLLAFGASNLPQDEVQALKDIGKTLGKKDWDFNIDPCNWSMTETMIYGEENKVSCNCSMLNDNFCHVVKIVLKSQNLQGTLPPELIRLPYLQEIDLTRNYLSGTIPREWGSSKLQQISLLGNRLTGPIPTELANITNLKRLILEFNQFYGNLPPELGNLSHIEQLHLSSNNFTGELPGTLARLTTLKEFRISDNQFSGNIPDFIQRWTSLEELVIQGSGLSGPIPSGISFLQKLIDLRISDLNGTDSTFPRVDNMKGLKTLILRSCNINDTLPHYLANLTLLQVLDLSYNKLSEDFPRNIKDLTGATYIYLTGNFLSGPVPELTKSTDRNLDLSYNNFTVENQEPETCYAQNVNLFASFRRNNSGPVSCNSSTRICTKTVKSLHINCGGKQTTIGGITYEEDIDPAGPAVYKESRGNWAISNTGHFLDNNTSPFLPYTSENQTRLYMTDTELYKNARISPVSLTYYGFCLENGDYTVKLRFAEIMFTDDNTYSSLGRRLFDVYIQGKRVLKDFNIANEAQGVGKELKKQFPAHVSSNDLEIRFYWAGKGTTYIPYKSINGPLISAISVKYISVNCGELSSNMSAGAIVAIVAAAVVAVILIVVGMLWWRGYLGKKHLLVRELKDLDLQTGLFTLHQIKAATNNFDISNKIGEGGFGPVYKGILSNGTVIAVKQLSPKSEQGKREFINEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLAKALFGPEECRLKLNWPTRKKICVGIARGLAFLHEESKLKVVHRDFKAANVLLDEDLNPKISDFGLAKLNEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIVSGTRNTLHRSKEEAVYLLDWARLLEEKGNLMELVDKRLVSDFNEEEVMMIVKVALLCTNATSNLRPTMSSVLSILEGITVVPEFVSHQSEVMDEMRLEALRNFYSKMEENKIREAQSLSLSINVPWTASSSSAANLNDVHRNSSYWEGKKLMKFV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi546g00003 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 590 - -
Gabi546g00003 1014 Pfam Protein tyrosine and serine/threonine kinase 665 933 IPR001245 GO:0004672|GO:0006468
Gabi546g00003 1014 ProSiteProfiles Protein kinase domain profile. 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi546g00003 1014 SUPERFAMILY L domain-like 63 340 - -
Gabi546g00003 1014 Pfam Malectin domain 401 585 IPR021720 -
Gabi546g00003 1014 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 35 195 - -
Gabi546g00003 1014 Pfam Leucine rich repeat 276 333 IPR001611 GO:0005515
Gabi546g00003 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Gabi546g00003 1014 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Gabi546g00003 1014 Gene3D Phosphorylase Kinase; domain 1 633 738 - -
Gabi546g00003 1014 Gene3D Transferase(Phosphotransferase) domain 1 739 954 - -
Gabi546g00003 1014 Gene3D Ribonuclease Inhibitor 203 401 IPR032675 -
Gabi546g00003 1014 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Gabi546g00003 1014 Gene3D Ribonuclease Inhibitor 32 198 IPR032675 -
Gabi546g00003 1014 SUPERFAMILY Protein kinase-like (PK-like) 646 957 IPR011009 -
Gabi546g00003 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 969 - -
Gabi546g00003 1014 CDD STKc_IRAK 669 937 - -
Gabi546g00003 1014 FunFam Leucine-rich repeat transmembrane protein kinase 198 401 - -
Gabi546g00003 1014 Gene3D - 402 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi546g00003 Gabi-Chr546 105900 130207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi546g00003 26 994 Receptor kinase-like Gene Family AT1G53420 53.340 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi546g00003 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi546g00003 - - gmx:100791136 1465.67