Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi546g00002 ATGGATAACGAGATTGATGTTCCTCCTTTCTTTCTCTGCCCCATTTCGTTAGAAATCATGAAGGATCCAGTGACAGTTTCCACAGGGATAACCTACGACAGAGAGAGCATTGAGAAATGGCTCTTTTCTGAGAAAAACAAGACATGTCCTGTCACAAACCTACCTCTTCCTCTGCTCTCAGATTGCACTGATCTCACCCCAAATCACACCCTTCGTAGATTGATTCAAGCATGGTGTACAATGAACTCTTCTCACGGCATTCAAAGGATTCCAACTCCCAAACCTCCAGTCAACAAAAACACCATAGAAAAACTCCTCAAAGATGCTTCTGACAAGCCTCAGTTGCAGATCCAATGCTTAAGAAGCCTCAAATCCATTGCTTCTGAGAGTGAAACAAATAGACGCTGCATCGAATCCTCTGGTGCTGTTCATTTCTTAGCATCATTGGTAATCAACAACATCAAAGAATTAGAGTCTTGCCTAGATGATGATGATGATGTGTTTGACTTGAAAACAAGCGCAGGTGATGATGCTTTATGCATCCTCCATAGTCTAAATTTATCAGAAACTGGGTTGAAGACCCTTTTAGGCTTCAAAGATGGAGAATTCATGAACTCCTTAACAAGGGTCATGCAAAGGGGAATCTATGACTCACAAGCTTATGCAGTTTTATTGATGAAATCTATGTCTGAAGTGGCTAATTCTGTTGACATAGTTAATCTAAGAAATGAGTTGTTCATTGCATTAGTACATGTCCTTAAAGACCAGATTTCCCATAAGGCATCAAAAGCTACACTACAAACACTGATTCAACTCAGTCCTTGGGGGAGAAACAGGATCAAAGCAGTGGAAGCAGGAGCAATTCCAGTTTTGATTGAACTTCTTCTTGATTGTAAGGAAAGAAAGCCTTGTGAGATGATGCTAGTGCTCTTGGAGACTTTGTGCCAGTGTGCAGATGGAAGAGCTGAACTTTTGAGCCATGGTGCAGGGTTAGCCATTGTGTCAAAGAAGATTCTGAGGGTTTCTACAATGGCAAATGATAGGGCTGTGAAGATTCTATTGTCCATATCAAGGTTCTCTGCAACACCAAGTGTTGTTCAAGAAATGCTGCAACTTGGTGTGGTGGCAAAACTTTGTTTGGTCCTTCAAGTTGATAGTGGAAGCAAGGCCAAGGAGAAAGCAAGAGAGATTCTCAAATTGCATGCTCGGTCTTGGAGGAATTCTCCTTGCATACCAAGCAATTTGCTTGCTTCATACCCAACAATTTCTGCTACCGCTGCCAATTATGTTGCTCAAATGAATATGCTTCCAATGCTTAATGAGGCAAATTTCAAGCTGTGGAAAGAGAATGTGGAAATTGTTCTCAACTGCATGGATCTCGACAATGCACTAAGGACTGAGAAACCCACTTCCACTCAGGAAAATCCAAACCCGGATAAAATTGAGAAGTGGGAACGCTCAAATCGCATGTGTCTGATGATCATTAAACGTTCCGTTCTGGAGGTGTTTAGGGGCTCGATTGTTGAGACTACTGATGCCAAGTTGTTTCTAAAGGAACTCGAGCAATACTTTGCTCAAAATGAAAAGGCTGAAATTGGTCAAACCTTGTCCAAACTCATAAACATGAGGCGCTCTCAATTTATTGATCTCTGTAACACTACTCCTGATAATTCTGCATTTTTCCGGCTTATGCTGAACCGCGAGGTAGTAGTGGATTTTATCTTGCTCTTTGATTCTTTCTTCCGTGTGGTGATTCATCATGGGTCCAAAATTGATCAGTGGAGGAAGCTTGGTTATGATAAGGACCCAAATCATGAGAACTTTAGAAAGCTGCTGGGAGCCCCAGAATTGGATGCAGAGCAATTGGTGGCTGAACGGGTTCCAGTGCCAAACCTTCTGACGCTACTTGCGGGAAGGTGA 1920 0.4219 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSEKNKTCPVTNLPLPLLSDCTDLTPNHTLRRLIQAWCTMNSSHGIQRIPTPKPPVNKNTIEKLLKDASDKPQLQIQCLRSLKSIASESETNRRCIESSGAVHFLASLVINNIKELESCLDDDDDVFDLKTSAGDDALCILHSLNLSETGLKTLLGFKDGEFMNSLTRVMQRGIYDSQAYAVLLMKSMSEVANSVDIVNLRNELFIALVHVLKDQISHKASKATLQTLIQLSPWGRNRIKAVEAGAIPVLIELLLDCKERKPCEMMLVLLETLCQCADGRAELLSHGAGLAIVSKKILRVSTMANDRAVKILLSISRFSATPSVVQEMLQLGVVAKLCLVLQVDSGSKAKEKAREILKLHARSWRNSPCIPSNLLASYPTISATAANYVAQMNMLPMLNEANFKLWKENVEIVLNCMDLDNALRTEKPTSTQENPNPDKIEKWERSNRMCLMIIKRSVLEVFRGSIVETTDAKLFLKELEQYFAQNEKAEIGQTLSKLINMRRSQFIDLCNTTPDNSAFFRLMLNREVVVDFILLFDSFFRVVIHHGSKIDQWRKLGYDKDPNHENFRKLLGAPELDAEQLVAERVPVPNLLTLLAGR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi546g00002 639 Pfam U-box domain 7 83 IPR003613 GO:0004842|GO:0016567
Gabi546g00002 639 SUPERFAMILY ARM repeat 102 400 IPR016024 -
Gabi546g00002 639 FunFam RING-type E3 ubiquitin transferase 1 88 - -
Gabi546g00002 639 SMART Ubox_2 10 78 IPR003613 GO:0004842|GO:0016567
Gabi546g00002 639 SUPERFAMILY Helical domain of Sec23/24 520 575 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gabi546g00002 639 PANTHER WDSAM1 PROTEIN 4 414 IPR045185 GO:0061630
Gabi546g00002 639 Gene3D - 98 442 IPR011989 -
Gabi546g00002 639 ProSiteProfiles U-box domain profile. 6 85 IPR003613 GO:0004842|GO:0016567
Gabi546g00002 639 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 572 634 IPR036180 -
Gabi546g00002 639 Gene3D Severin 562 638 IPR029006 -
Gabi546g00002 639 SUPERFAMILY RING/U-box 4 87 - -
Gabi546g00002 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Gabi546g00002 639 CDD RING-Ubox_PUB 8 56 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi546g00002 Gabi-Chr546 54672 83158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi546g00002 1 420 U-box Gene Family AT3G52450 56.164 8.56e-169 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi546g00002 - - gmx:100809839 637.106