Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi545g00014 ATGGGTCTTGGTCTTCTTCCATTGCTTCTCTTTCACCTTTTGGTGTTTTTCTTCACTACCCATCACGCAAATGCCCTCAATGCTTCGTTTGCAAGCGACGCATTGTCCCTTCTTAGTTTCAAACGCTTAGTCTCTTCGGACCCTTCGAACCTTCTCGCCGGATGGACCAATCGCTCTTCTTCTAGTCTCTGCCGCTGGCACGGCGTCGCTTGCGGCGGCGGAAGCCTCTCCGGCGGAGTAACCGCCCTGAACTTGACCGGTCTTCAAGGCGGTGAATTGGCTCCTTCTGTCGGAGACTTGTCAGAGCTTCGTGTCCTGTCCATTCCCGGCAACATGTTTTCCGGCGAGATTCCGGCGAGCTTAGGGAGGCTCCGGGTTCTCGAGGTTCTTGAGCTACAAGGGAACAACTTTTCTGGGAGAGTCCCTAGTCAGATGAGTTATCTTCAATCTCTTAACCTTGTTAACCTCTCTGGCAATGCTTTATCTGGTTCCATACCCCGTGAGTTTATTGGCTCTGGGAATGTAAAAATCGTTGATTTATCGAATAATCAGTTTTCTGGTAAGATTGTAGTGGATGGTTTGGGTGGTTGTGATTCCTTGAACCATTTGAAGCTGTCCCACAACTTTCTGACTGGTGAGGTTCCACCACAGATTGGGAAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAATATCTTGGAAGGTAGAATCCCTCCTGAGATTGGTTATGCTGTTGAACTTAGAGTTCTAGATGTTTCTAGAAATAGCTTGACTGGAAGGATCCCCAAAGAGCTTGCCAATTGTTTGAAATTGTCTGTGCTTGTGCTGACTGATTTGTTTGATGATCGCGGGGTTGATGAGGGAAGCTTGGAGGATAGCTTTAGAGGAGAGTTCAATGCCTTTGTTGGGAATATTCCTCATGAAGTATTGTTGCTTTCGAGCTTGCAGGTTCTGTGGGCACCAAGAGCGAATCTTGGCGGAAGGTTGCCTAGTGGCTGGACAGATTCATGCTCTCTGAGAGTACTAAATTTGGCACAGAATTATGTTACTGGTGTCATGCCTGAAAGTTTGGGGAGGTGTAGAAATTTAACTTTCTTGGATTTGAGTTCTAACAATTTAGTGGGATATTTGCCTTCGCAGCAGCTTCAGGTTCCTTGTATGATGTACTTCAATGTTAGTAGGAATAATATATCGGGCATACTTCCAAGATTTCGGAACGAAAGCTGTCCTGCGAGTAGCATCTCTGCCCCTCCAGACCCTGCATTCCTAGAATTGGAAGGTATTAATGATGCATACTTCAATTTTCCTGTTTGGAGGTTTCAGCAGAATGCACTCGTTGGATCAGGTTTTGAAGAAACTAATGTTGTTAGGCATGATTTCAGTTGGAACAGTTTTGTGGGATCCTTACCTTTGTTCTCTCTTGAAGGTAATCTTTTTACTGCAGACCGCAAAGTCTCCTACATGCTGTTTCTCAATAATAATATGTTCAATGGAACTCTACCATACCAACTGGTTTCAAACTGTAATGACCTCAAAACATTGTCAGTTAACTTGAGTGTGAACCAACTATCCAGTGGGAATTCCCAGGCATTGTTTCTGGACTGTCTGCAGTTGACAGATTTTGAAGCAGCATACAACCAGATTGGAGGGTCAATTGGACCTGGTATAGGTGACTACACGATGCTTCGGCGTCTTGATTTAAGTGGAAACAAACTATCTGGATCCCTGCCTGATCAGTTGGGAAACCTGAAAAACATAAAATGGATGCTTCTAGGTGGGAACAATCTAACTGGGGAAATTCCTTCCCGACTTGGTCAATTGACTTCCCTTGCTGTCTTGAATCTGTCTCACAATACTCTAATTGGAACAATCCCTGCGAGTTTGTCGAATGCCACAAGTCTTGAAATTCTTTTGCTAAATCACAACAACCTTTTTGGGGAAATACCTTTATCTATTTCTGCTCTTTCCAATCTTGTTCAAATAGATGTTTCTTTCAACAATCTTTCTGGTCATATTCCTTATCTTCAACACCCAAGTGATTGTGATTCCTATAAAGGGAATAAACATCTGCACTCTTGCCCTGATCCGTACTCTGACTCACCTGCTTCTCTTCCAGTCCCTCTTGAAGTCCAAAATTTGCGTAGGCACAGAAAATTAAGTACATTAGTCATTGTGGTGGTCACTTCTGCTTCTGTGGCTCTCTGCATACTTTTGGGATTAGTATTGCTGATCTTTTTTGGAAGGAGTAAATTTGGTCGGCTTAGCAGTATTAGAAGGCGACAGGTAGTGACTTTTCAAGATGTTCCAATAGAATTGAGTTATGACAGTGTGGTCACAGCTACCGGAAATTTCAGCATCCGGTATCTAATTGGCAGAGGTGGCTTTGGCTCAACTTACAAGGCAGAACTTTCTTCAGGTTTTCTTGTTGCCATCAAGAGGTTGTCCATAGGTAGATTTCAAGGCATTCAACAATTTGAAACAGAAATAAGGACATTAGGGAGAATTCAACACAAGAATCTTGTGACTCTTATTGGCTATTATGTAGGAAAGGCTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGGAACCTTGAAGCTTTCATACATGACAGGTCAGGGAAAAATGTTCAGTGGCCAGTCATTTACAAAATTGCAAAAGACATAGCAGAGGCCCTTGCTTTCCTTCATTACTCTTGTGTTCCGCGCATAGTTCACCGGGATATCAAGCCTAGCAACATCTTACTTGATGAAGATCTTAATGCCTACTTGTCAGATTTCGGCTTGGCGCGGCTACTTGAGGTATCTGAGACCCATGCTACTACTGATGTGGCAGGCACATTTGGTTATGTTGCACCTGAATATGCCACAACTTGCAGGGTTTCTGACAAAGCTGATGTTTATAGCTTTGGTGTAGTGTTATTAGAATTGATGTCTGGAAAAAGGTCACTTGATCCATCATTTTCTGAATATGGAAATGGATTCAATATTGTACCATGGGCTGAGCTGCTAATGACTGAAGGTCGTTGTTCTGAGCTATTTTCATCTGCTTTGTGGGAAACAGGCCCTCAGGAAAAGTTGTTGGGGCTTTTAAAGCTTGCATTAACATGCACAGTAGAGACTCTTTCTATTCGACCTTCCATGAAGCAGGTTCTGGAGAAATTGAAACAATTGAAAACTTGA 3186 0.4313 MGLGLLPLLLFHLLVFFFTTHHANALNASFASDALSLLSFKRLVSSDPSNLLAGWTNRSSSSLCRWHGVACGGGSLSGGVTALNLTGLQGGELAPSVGDLSELRVLSIPGNMFSGEIPASLGRLRVLEVLELQGNNFSGRVPSQMSYLQSLNLVNLSGNALSGSIPREFIGSGNVKIVDLSNNQFSGKIVVDGLGGCDSLNHLKLSHNFLTGEVPPQIGKCRNLRTLLVDGNILEGRIPPEIGYAVELRVLDVSRNSLTGRIPKELANCLKLSVLVLTDLFDDRGVDEGSLEDSFRGEFNAFVGNIPHEVLLLSSLQVLWAPRANLGGRLPSGWTDSCSLRVLNLAQNYVTGVMPESLGRCRNLTFLDLSSNNLVGYLPSQQLQVPCMMYFNVSRNNISGILPRFRNESCPASSISAPPDPAFLELEGINDAYFNFPVWRFQQNALVGSGFEETNVVRHDFSWNSFVGSLPLFSLEGNLFTADRKVSYMLFLNNNMFNGTLPYQLVSNCNDLKTLSVNLSVNQLSSGNSQALFLDCLQLTDFEAAYNQIGGSIGPGIGDYTMLRRLDLSGNKLSGSLPDQLGNLKNIKWMLLGGNNLTGEIPSRLGQLTSLAVLNLSHNTLIGTIPASLSNATSLEILLLNHNNLFGEIPLSISALSNLVQIDVSFNNLSGHIPYLQHPSDCDSYKGNKHLHSCPDPYSDSPASLPVPLEVQNLRRHRKLSTLVIVVVTSASVALCILLGLVLLIFFGRSKFGRLSSIRRRQVVTFQDVPIELSYDSVVTATGNFSIRYLIGRGGFGSTYKAELSSGFLVAIKRLSIGRFQGIQQFETEIRTLGRIQHKNLVTLIGYYVGKAEMFLIYNYLSGGNLEAFIHDRSGKNVQWPVIYKIAKDIAEALAFLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGKRSLDPSFSEYGNGFNIVPWAELLMTEGRCSELFSSALWETGPQEKLLGLLKLALTCTVETLSIRPSMKQVLEKLKQLKT 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi545g00014 1061 SUPERFAMILY RNI-like 86 405 - -
Gabi545g00014 1061 Gene3D Ribonuclease Inhibitor 27 89 IPR032675 -
Gabi545g00014 1061 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 234 1058 - -
Gabi545g00014 1061 Gene3D Transferase(Phosphotransferase) domain 1 861 1061 - -
Gabi545g00014 1061 SUPERFAMILY Protein kinase-like (PK-like) 763 1056 IPR011009 -
Gabi545g00014 1061 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Gabi545g00014 1061 CDD STKc_IRAK 791 1059 - -
Gabi545g00014 1061 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 449 702 - -
Gabi545g00014 1061 Pfam Protein kinase domain 790 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi545g00014 1061 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Gabi545g00014 1061 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 749 860 - -
Gabi545g00014 1061 PRINTS Leucine-rich repeat signature 608 621 - -
Gabi545g00014 1061 PRINTS Leucine-rich repeat signature 563 576 - -
Gabi545g00014 1061 SUPERFAMILY L domain-like 303 679 - -
Gabi545g00014 1061 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 192 280 - -
Gabi545g00014 1061 FunFam Leucine-rich repeat receptor-like protein kinase 30 191 - -
Gabi545g00014 1061 ProSitePatterns Protein kinases ATP-binding region signature. 791 813 IPR017441 GO:0005524
Gabi545g00014 1061 Gene3D Phosphorylase Kinase; domain 1 748 860 - -
Gabi545g00014 1061 SMART serkin_6 785 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi545g00014 1061 Pfam Leucine Rich Repeat 563 584 IPR001611 GO:0005515
Gabi545g00014 1061 Pfam Leucine Rich Repeat 248 269 IPR001611 GO:0005515
Gabi545g00014 1061 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 861 1061 - -
Gabi545g00014 1061 ProSiteProfiles Protein kinase domain profile. 785 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi545g00014 1061 Gene3D Ribonuclease Inhibitor 430 693 IPR032675 -
Gabi545g00014 1061 Gene3D Ribonuclease Inhibitor 90 280 IPR032675 -
Gabi545g00014 1061 Gene3D Ribonuclease Inhibitor 293 426 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi545g00014 Gabi-Chr545 103406 108061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi545g00014 9 1060 Receptor kinase-like Gene Family AT3G02130 43.130 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Gabi545g00014 Pkinase 9.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi545g00014 - - gmx:100795047 1623.6