Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi542g00017 ATGGGGAAGAAAGGAGGAAGCTGGTTCTCATCAGTGAAGAAAGTTTTCAAGTCATCTTCTAAGGACTCGCCGGTGCCGGAAAAGAAGAAAAACAAGGAAGAGAAATGGCAGCATGAAGTTGCAGAGGTGGTGTCTTTTGAGAATTTTCCTCCAGAGAGTTCTCCAGATGTCACCAATGAGGGAAGTACCACATCAACACCTGTGACTGAAGATAGAAATCATGCCATTGCCTTTGCTGCAGCAACTGCCGCAGCTGCTGAAGCTGCAGTTGCAGCTGCTCAAGCAGCTGCTAGAGTTGTGAAATTGGCAGGTTATGGACGCTACTCTAACGAAGAATCTGCAGCAACACTCATTCAATCATACTACAGAGGATACCTTGCTAGACGTGCATTGCGTGCTTTGAAGGGATTAGTGAGGCTGCAAGCACTTGTGAGGGGACATAATGTGCGCAAGCAAGCGCACGTGACAATGCGGTGCATGCAAGCATTAGTCCGAGTACAGGCACGAGTAAGAGCTCGCAGACTCCACTTGACTCAGAAGAAGCAAAGAGAACTCGATGAACAAAAACCTAAGCTTATGAGCCCCGTGACAAAGTTAAACTCAGATGGTTGGGAAAATAGGCGACTAAGTAGTCAGAAAATTAAGGAACGTGATTTGATGAAACATGAAGCTGCAATGAAAAGGGAGAGAGCTCTTGCATACGCTTACAACTGCCAGCAGCAACAGCAGAAGCAATATTTGCAGATAGACCAACATGGTGATGATATTGGAAGCGATTGGAATTGGTTGGAAAGTTGGATGTCATCACAATCACACCATGTTAGACATTTGGGGTCACGTGGGACCCAATACATGACTCTTAATACAGCCACTGCCACCGCAGATGACATGTCTGAAGAAAAAACAGTTGAAATGGACATGGTTCTGCCTCTGGACTCAACTCACCCCAACATGGGCCTCATGAATCGAGACTTTCTTTATTCAAGCCCAATCTCCAATCGGCACCACCATCGGCAGCACAGTGGGAATGTACCTAGCTATATGGCTCCAACCCAGTCAGCAAAGGCCAAGGTTCGGAGTCAAGGCCCATTTAAGCAACGGACTTCATCTGGGCCTCACTGGAACTCATCCACTAGGAATAGTCCTGCTATTGGGTTGGGCTGTGACTCATCCAGCTCTGGTGGGGCCACTACAGCTAATCAATTTTTAAGGAGTCCAAGCCCAAAAATCAATGGGATTCGACCCCAATCTAGACGGATTTCAAGTGGTTGCCCAGATGATGTTGGGGTTGAAGATTGGGCCGTTCCTCTTGGACCCCACGGTTGGGCATGA 1332 0.4752 MGKKGGSWFSSVKKVFKSSSKDSPVPEKKKNKEEKWQHEVAEVVSFENFPPESSPDVTNEGSTTSTPVTEDRNHAIAFAAATAAAAEAAVAAAQAAARVVKLAGYGRYSNEESAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAHVTMRCMQALVRVQARVRARRLHLTQKKQRELDEQKPKLMSPVTKLNSDGWENRRLSSQKIKERDLMKHEAAMKRERALAYAYNCQQQQQKQYLQIDQHGDDIGSDWNWLESWMSSQSHHVRHLGSRGTQYMTLNTATATADDMSEEKTVEMDMVLPLDSTHPNMGLMNRDFLYSSPISNRHHHRQHSGNVPSYMAPTQSAKAKVRSQGPFKQRTSSGPHWNSSTRNSPAIGLGCDSSSSGGATTANQFLRSPSPKINGIRPQSRRISSGCPDDVGVEDWAVPLGPHGWA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi542g00017 443 Pfam Protein of unknown function (DUF4005) 330 381 IPR025064 -
Gabi542g00017 443 Gene3D - 110 154 - -
Gabi542g00017 443 MobiDBLite consensus disorder prediction 15 68 - -
Gabi542g00017 443 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Gabi542g00017 443 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Gabi542g00017 443 SMART iq_5 110 132 IPR000048 GO:0005515
Gabi542g00017 443 SMART iq_5 133 154 IPR000048 GO:0005515
Gabi542g00017 443 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515
Gabi542g00017 443 Pfam IQ calmodulin-binding motif 138 153 IPR000048 GO:0005515
Gabi542g00017 443 MobiDBLite consensus disorder prediction 357 418 - -
Gabi542g00017 443 MobiDBLite consensus disorder prediction 357 429 - -
Gabi542g00017 443 MobiDBLite consensus disorder prediction 20 41 - -
Gabi542g00017 443 PANTHER IQ-DOMAIN 5-RELATED 1 390 - -
Gabi542g00017 443 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi542g00017 Gabi-Chr542 145811 150335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi542g00017 1 409 IQD Protein Family AT3G49260 50.998 3.96e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi542g00017 - - aprc:113873497 585.874