Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi542g00016 ATGGGGAAGAAAGGAGGAAGCTGGTTCTCATCAGTGAAGAAAGTTTTCAAGTCATCTTCTAAGGACTCGCCGGTGCCGGAAAAGAAGAAAAACAAGGAAGAGAAATGGCAGCATGAAGTTGCAGAGGTGGTGTCTTTTGAGAATTTTCCTCCAGAGAGTTCTCCAGATGTCACCAATGAGGGAAGTACCACATCAACACCTGTGACTGAAGATAGAAATCATGCCATTGCCTTTGCTGCAGCAACTGCCGCAGCTGCTGAAGCTGCAGTTGCAGCTGCTCAAGCAGCTGCTAGAGTTGTGAAATTGGCAGGTTATGGACGCTACTCTAACGAAGAATCTGCAGCAACACTCATTCAATCATACTACAGAGGATACCTTGCTAGACGTGCATTGCGTGCTTTGAAGGGATTAGTGAGGCTGCAAGCACTTGTGAGGGGACATAATGTGCGCAAGCAAGCGCACGTGACAATGCGGTGCATGCAAGCATTAGTCCGAGTACAGGCACGAGTAAGAGCTCGCAGACTCCACTTGACTCAGAAGAAGCAAAGAGAACTCGATGAACAAAAACCTAAGCTTATGAGCCCCGTGACAAAGTTAAACTCAGATGGTTGGGAAAATAGGCGACTAAGTAGTCAGAAAATTAAGGAACGTGATTTGATGAAACATGAAGCTGCAATGAAAAGGGAGAGAGCTCTTGCATACGCTTACAACTGCCAGCAACAGCAGAAGCAATATTTGCAGATAGACCAACATGGTGATGATATTGGAAGCGATTGGAATTGGTTGGAAAGTTGGATGTCATCACAATCACACCATGTTAGACATTTGGGGTCACGTGGGACCCAATACATGACTCTTAATACAGCCACTGCCACCGCAGATGACATGTCTGAAGAAAAAACAGTTGAAATGGACATGGTTCTGCCTCTGGACTCAACTCACCCCAACATGGGCCTCATGAATCGAGACTTTCTTTATTCAAGCCCAATCTCCAATCGGCACCACCATCGGCAGCACAGTGGGAATGTACCTAGCTATATGGCTCCAACCCAGTCAGCAAAGGCCAAGGTTCGGAGTCAAGGCCCATTTAAGCAACGGACTTCATCTGGGCCTCACTGGAACTCATCCACTAGGAATAGTCCTGCTATTGGGTTGGGCTGTGACTCATCCAGCTCTGGTGGGGCCACTACAGCTAATCAATTTTTAAGGAGTCCAAGCCCAAAAATCAATGGGATTCGACCCCAATCTAGACGGATTTCAAGTGGTTGCCCAGATGATGTTGGGGTTGAAGATTGGGCCGTTCCTCTTGGACCCCACGGTTGGGCATGA 1329 0.4748 MGKKGGSWFSSVKKVFKSSSKDSPVPEKKKNKEEKWQHEVAEVVSFENFPPESSPDVTNEGSTTSTPVTEDRNHAIAFAAATAAAAEAAVAAAQAAARVVKLAGYGRYSNEESAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAHVTMRCMQALVRVQARVRARRLHLTQKKQRELDEQKPKLMSPVTKLNSDGWENRRLSSQKIKERDLMKHEAAMKRERALAYAYNCQQQQKQYLQIDQHGDDIGSDWNWLESWMSSQSHHVRHLGSRGTQYMTLNTATATADDMSEEKTVEMDMVLPLDSTHPNMGLMNRDFLYSSPISNRHHHRQHSGNVPSYMAPTQSAKAKVRSQGPFKQRTSSGPHWNSSTRNSPAIGLGCDSSSSGGATTANQFLRSPSPKINGIRPQSRRISSGCPDDVGVEDWAVPLGPHGWA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi542g00016 442 Gene3D - 110 154 - -
Gabi542g00016 442 PANTHER IQ-DOMAIN 5-RELATED 1 389 - -
Gabi542g00016 442 MobiDBLite consensus disorder prediction 356 417 - -
Gabi542g00016 442 MobiDBLite consensus disorder prediction 15 68 - -
Gabi542g00016 442 MobiDBLite consensus disorder prediction 356 427 - -
Gabi542g00016 442 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Gabi542g00016 442 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Gabi542g00016 442 SMART iq_5 110 132 IPR000048 GO:0005515
Gabi542g00016 442 SMART iq_5 133 154 IPR000048 GO:0005515
Gabi542g00016 442 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515
Gabi542g00016 442 Pfam IQ calmodulin-binding motif 138 153 IPR000048 GO:0005515
Gabi542g00016 442 Pfam Protein of unknown function (DUF4005) 329 380 IPR025064 -
Gabi542g00016 442 MobiDBLite consensus disorder prediction 20 41 - -
Gabi542g00016 442 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi542g00016 Gabi-Chr542 145811 150335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi542g00016 1 408 IQD Protein Family AT3G49260 50.776 2.83e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi542g00016 - - aprc:113873497 582.793