Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi542g00010 ATGGACTTGGACAGCATTGAGTGTGTGTCATCCTTGGATGGCATGGATGAGGATGAGATCCACCCTCACCATCACTCTGAGTTTTCTTCCACAAAACCTCGCAATGGAGGCACAAATAACAATAATAATATGGGCCCCACCGCCATTACTCCAGCAACCAGCGTTCATGAGTTGTTAGAATGCCCTGTGTGTACTAATTCAATGTACCCACCAATTCATCAGTGTCACAATGGCCACACACTGTGTTCCACATGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAGGAGCTTGGAGATATTAGGTGTCTGGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACAACCTTGGATGTCCAGAAATCTTTCCGTACTATAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGACCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGGGACATTCCCTTCCTTGTTGCTCATTTGAGGGACGATCATAAGGTGGACATGCACACCGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTTGAGAATGCAACCTGGATGCTCACGGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAGCTCATTTGGGAGGGGACGCCAAGAAGTATTAGGGATAGCCACCGTAAAGTCAGGGATAGCCATGACGGTCTCATTATTCAACGAAATATGGCCCTTTTTTTCTCTGGTGGGGATAGGAAGGAGCTCAAACTCAGAGTTACGGGAAGAATATGGAAGGAACAGAATGCAGATGCTGGTGTGTGCGTACCAAATCTCTCTAGCTGA 969 0.4592 MDLDSIECVSSLDGMDEDEIHPHHHSEFSSTKPRNGGTNNNNNMGPTAITPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYNLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNADAGVCVPNLSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi542g00010 322 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Gabi542g00010 322 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 302 IPR008974 GO:0005515
Gabi542g00010 322 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Gabi542g00010 322 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Gabi542g00010 322 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi542g00010 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 113 IPR013083 -
Gabi542g00010 322 SUPERFAMILY RING/U-box 48 103 - -
Gabi542g00010 322 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 308 - -
Gabi542g00010 322 MobiDBLite consensus disorder prediction 31 47 - -
Gabi542g00010 322 CDD Sina 175 303 - -
Gabi542g00010 322 SUPERFAMILY TRAF domain-like 114 306 - -
Gabi542g00010 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 167 IPR013083 -
Gabi542g00010 322 MobiDBLite consensus disorder prediction 16 30 - -
Gabi542g00010 322 FunFam E3 ubiquitin-protein ligase SINAT3 11 112 - -
Gabi542g00010 322 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Gabi542g00010 322 CDD RING-HC_SIAHs 59 97 - -
Gabi542g00010 322 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi542g00010 Gabi-Chr542 75676 78486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi542g00010 52 309 C3H Transcription Factor Family AT2G41980 82.171 2.78e-164 458