Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi542g00009 ATGGACTTGGACAGCATTGAGTGTGTGTCATCCTTGGATGGCATGGATGAGGATGAGATCCACCCTCACCATCACTCTGAGTTTTCTTCCACAAAACCTCGCAATGGAGGCACAAATAACAATAATAATATGGGCCCCACCGCCATTACTCCAGCAACCAGCGTTCATGAGTTGTTAGAATGCCCTGTGTGTACTAATTCAATGTACCCACCAATTCATCAGGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAGCTCATTTGGGAGGGGACGCCAAGAAGTATTAGGGATAGCCACCGTAAAGTCAGGGATAGCCATGACGGTCTCATTATTCAACGAAATATGGCCCTTTTTTTCTCTGGTGGGGATAGGAAGGAGCTCAAACTCAGAGTTACGGGAAGAATATGGAAGGAACAGAATGCAGATGCTGGTGTGTGCGTACCAAATCTCTCTAGCTGA 582 0.4622 MDLDSIECVSSLDGMDEDEIHPHHHSEFSSTKPRNGGTNNNNNMGPTAITPATSVHELLECPVCTNSMYPPIHQVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNADAGVCVPNLSS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi542g00009 193 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 69 173 IPR008974 GO:0005515
Gabi542g00009 193 MobiDBLite consensus disorder prediction 31 46 - -
Gabi542g00009 193 Pfam Seven in absentia protein family 74 173 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi542g00009 193 FunFam E3 ubiquitin-protein ligase SINAT5-like 65 173 - -
Gabi542g00009 193 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 74 179 - -
Gabi542g00009 193 SUPERFAMILY TRAF domain-like 70 177 - -
Gabi542g00009 193 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi542g00009 Gabi-Chr542 75676 78486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi542g00009 52 74 C3H Transcription Factor Family AT2G41980 78.261 2.53e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi542g00009 K04506 - gmx:100810573 243.047